LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7b-3p


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Gene
miRNA
Score
DIANA Links
AC005154.6
hsa-let-7b-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000584023
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
303-318
0.034
0
LINC01139
hsa-let-7b-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_015407.1
Biotype: lincRNA
Gene id: NR_015407.1 (gene)
Gene Name: LINC01139
UCSC graphic: -
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-131
0.019
0
7mer
726-731
0.009
1
7mer
707-721
0.007
1
LINC01320
hsa-let-7b-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000621006
Biotype: lincRNA
Gene id: ENSG00000228262
Gene Name: LINC01320
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-44
0.026
1
6mer
268-290
0.008
5
XLOC_001489
hsa-let-7b-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002901
Biotype: transcript isomorph
Gene id: XLOC_001489
Gene Name: XLOC_001489
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
453-469
0.025
0
8mer
1335-1345
0.009
0
RP11-314B1.2
hsa-let-7b-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609089
Biotype: lincRNA
Gene id: ENSG00000273301
Gene Name: RP11-314B1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1386-1400
0.010
11
6mer
4436-4452
0.006
9
6mer
4420-4424
0.005
5
7mer
4000-4014
0.005
3
6mer
3747-3751
0.002
0
6mer
1833-1849
0.002
4
6mer
4055-4059
0.002
1
7mer
1866-1888
0.002
0
RP11-159G9.5
hsa-let-7b-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000623596
Biotype: lincRNA
Gene id: ENSG00000229729
Gene Name: RP11-159G9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
385-410
0.034
8
RP11-544A12.4
hsa-let-7b-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000415391
Biotype: antisense
Gene id: ENSG00000236986
Gene Name: RP11-544A12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-155
0.034
1
RP11-386G21.1
hsa-let-7b-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522186
Biotype: lincRNA
Gene id: ENSG00000253976
Gene Name: RP11-386G21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
87-92
0.017
1
7mer
13-18
0.010
Not Conserved
6mer
185-189
0.007
0
RP13-126C7.1
hsa-let-7b-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560531
Biotype: antisense
Gene id: ENSG00000259277
Gene Name: RP13-126C7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-97
0.018
0
6mer
104-108
0.008
0
6mer
80-84
0.008
0
RP11-321M21.1
hsa-let-7b-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579278
Biotype: lincRNA
Gene id: ENSG00000266774
Gene Name: RP11-321M21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
134-147
0.034
9
RP11-705O1.8
hsa-let-7b-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581677
Biotype: lincRNA
Gene id: ENSG00000263884
Gene Name: RP11-705O1.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2092-2105
0.029
1
7mer
1625-1630
0.005
Not Conserved
XLOC_005784
hsa-let-7b-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012226
Biotype: transcript isomorph
Gene id: XLOC_005784
Gene Name: XLOC_005784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1607-1624
0.012
1
7mer
918-930
0.007
1
6mer
158-162
0.006
1
6mer
114-118
0.005
1
6mer
711-721
0.004
1
XLOC_001272
hsa-let-7b-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000027
Biotype: transcript isomorph
Gene id: XLOC_001272
Gene Name: XLOC_001272
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-129
0.019
0
7mer
724-729
0.009
1
7mer
705-719
0.007
1
AC005754.8
hsa-let-7b-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606030
Biotype: lincRNA
Gene id: ENSG00000272108
Gene Name: AC005754.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
408-413
0.014
2
8mer
852-864
0.012
0
7mer
1249-1267
0.005
1
6mer
1036-1053
0.003
0
RP1-156L9.1
hsa-let-7b-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419784
Biotype: lincRNA
Gene id: ENSG00000236485
Gene Name: RP1-156L9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
725-750
0.027
0
6mer
40-44
0.007
0
LINC01139
hsa-let-7b-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000400946
Biotype: lincRNA
Gene id: ENSG00000215808
Gene Name: LINC01139
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-131
0.019
0
7mer
726-731
0.009
1
7mer
707-721
0.007
1
XLOC_008072
hsa-let-7b-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017250
Biotype: transcript isomorph
Gene id: XLOC_008072
Gene Name: XLOC_008072
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4079-4092
0.013
3
6mer
4055-4059
0.008
2
6mer
4134-4154
0.006
0
6mer
1257-1282
0.004
2
6mer
3141-3150
0.004
1
INHBA-AS1
hsa-let-7b-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000420821
Biotype: antisense
Gene id: ENSG00000224116
Gene Name: INHBA-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
704-723
0.013
2
7mer
1778-1783
0.011
1
7mer
970-988
0.006
0
6mer
849-853
0.003
2
RP11-383J24.6
hsa-let-7b-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607837
Biotype: lincRNA
Gene id: ENSG00000271975
Gene Name: RP11-383J24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
450-460
0.015
1
6mer
89-106
0.013
2
7mer
809-822
0.006
0
AC003984.1
hsa-let-7b-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000450977
Biotype: lincRNA
Gene id: ENSG00000235139
Gene Name: AC003984.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4058-4074
0.028
1
6mer
22-42
0.005
2
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