LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7b-3p


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Gene
miRNA
Score
DIANA Links
LINC00475
hsa-let-7b-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417983
Biotype: lincRNA
Gene id: ENSG00000225511
Gene Name: LINC00475
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
653-666
0.040
0
LINC00992
hsa-let-7b-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_046089.1
Biotype: lincRNA
Gene id: NR_046089.1 (gene)
Gene Name: LINC00992
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3054-3059
0.010
1
7mer
2559-2578
0.008
0
7mer
85-110
0.008
0
6mer
2338-2351
0.006
3
7mer
1390-1406
0.004
1
6mer
2617-2621
0.004
0
GJA9-MYCBP
hsa-let-7b-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037636.1
Biotype: sense
Gene id: NR_037636.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2120-2133
0.030
9
6mer
554-579
0.006
2
6mer
1785-1805
0.003
1
SLC16A1-AS1
hsa-let-7b-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428411
Biotype: antisense
Gene id: ENSG00000226419
Gene Name: SLC16A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8649-8664
0.025
1
6mer
8403-8407
0.007
2
6mer
8649-8671
0.006
1
6mer
3277-3293
0.002
0
XLOC_006485
hsa-let-7b-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013855
Biotype: transcript isomorph
Gene id: XLOC_006485
Gene Name: XLOC_006485
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
138-163
0.015
0
8mer
1020-1026
0.013
1
7mer
2096-2116
0.005
0
6mer
569-582
0.003
0
6mer
2441-2467
0.002
Not Conserved
6mer
2399-2403
0.001
0
LINC01089
hsa-let-7b-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000428029
Biotype: lincRNA
Gene id: ENSG00000212694
Gene Name: LINC01089
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
879-900
0.038
10
RNU6ATAC35P
hsa-let-7b-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609276
Biotype: lincRNA
Gene id: ENSG00000221571
Gene Name: RNU6ATAC35P
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-30
0.019
0
8mer
156-165
0.019
1
RP11-102L12.2
hsa-let-7b-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560231
Biotype: antisense
Gene id: ENSG00000259326
Gene Name: RP11-102L12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1820-1830
0.025
1
8mer
1505-1518
0.007
0
7mer
1262-1267
0.004
0
6mer
1340-1360
0.003
1
CTB-131B5.2
hsa-let-7b-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508713
Biotype: sense_intronic
Gene id: ENSG00000250069
Gene Name: CTB-131B5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
122-136
0.015
1
7mer
976-996
0.010
0
7mer
737-756
0.009
0
6mer
2118-2136
0.004
1
TCERG1L-AS1
hsa-let-7b-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000436942
Biotype: antisense
Gene id: ENSG00000230098
Gene Name: TCERG1L-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
422-435
0.038
1
RP11-121A8.1
hsa-let-7b-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609522
Biotype: lincRNA
Gene id: ENSG00000272908
Gene Name: RP11-121A8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
173-185
0.024
1
6mer
199-221
0.008
1
8mer
668-690
0.005
Not Conserved
GJA9-MYCBP
hsa-let-7b-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037635.1
Biotype: sense
Gene id: NR_037635.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2120-2133
0.028
9
6mer
554-579
0.006
2
6mer
1785-1805
0.003
1
CTD-2553L13.10
hsa-let-7b-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000612269
Biotype: lincRNA
Gene id: ENSG00000274104
Gene Name: CTD-2553L13.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
62-80
0.038
1
XLOC_014155
hsa-let-7b-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029514
Biotype: transcript isomorph
Gene id: XLOC_014155
Gene Name: XLOC_014155
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Breast Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
542-558
0.026
1
6mer
476-480
0.011
0
MIR6818
hsa-let-7b-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19384-19399
0.007
1
6mer
4276-4280
0.005
6
7mer
7408-7413
0.004
1
8mer
32075-32098
0.004
1
7mer
21682-21708
0.003
0
7mer
10112-10123
0.002
0
6mer
17354-17362
0.002
3
6mer
13015-13035
0.002
2
6mer
18908-18920
0.002
1
6mer
3866-3889
0.002
0
6mer
21875-21895
0.002
1
6mer
20498-20506
0.001
0
LINC01089
hsa-let-7b-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536662
Biotype: lincRNA
Gene id: ENSG00000212694
Gene Name: LINC01089
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
381-402
0.037
10
CTD-2033A16.1
hsa-let-7b-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562696
Biotype: antisense
Gene id: ENSG00000261602
Gene Name: CTD-2033A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-38
0.027
1
6mer
397-416
0.010
3
CTC-525D6.1
hsa-let-7b-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000582581
Biotype: lincRNA
Gene id: ENSG00000264515
Gene Name: CTC-525D6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-161
0.037
6
RP11-281P23.2
hsa-let-7b-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514452
Biotype: lincRNA
Gene id: ENSG00000249631
Gene Name: RP11-281P23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
252-273
0.019
Not Conserved
8mer
277-283
0.018
2
LINC01240
hsa-let-7b-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000602434
Biotype: lincRNA
Gene id: ENSG00000270109
Gene Name: LINC01240
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
264-269
0.026
1
6mer
74-88
0.011
1
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