LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7b-3p


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Gene
miRNA
Score
DIANA Links
XLOC_002102
hsa-let-7b-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004261
Biotype: transcript isomorph
Gene id: XLOC_002102
Gene Name: XLOC_002102
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-50
0.022
1
7mer
179-196
0.011
1
6mer
199-212
0.006
1
6mer
256-265
0.004
Not Conserved
PWARSN
hsa-let-7b-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_022011.1
Biotype: sense
Gene id: NR_022011.1 (gene)
Gene Name: PWARSN
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
205-211
0.022
1
8mer
592-617
0.018
0
6mer
437-453
0.004
1
XLOC_012370
hsa-let-7b-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025543
Biotype: transcript isomorph
Gene id: XLOC_012370
Gene Name: XLOC_012370
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
524-530
0.033
0
6mer
862-878
0.011
0
LINC01089
hsa-let-7b-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535643
Biotype: lincRNA
Gene id: ENSG00000212694
Gene Name: LINC01089
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
762-783
0.035
10
6mer
120-133
0.004
1
6mer
35-54
0.003
Not Conserved
CTA-796E4.5
hsa-let-7b-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3557-3570
0.009
1
7mer
31225-31245
0.006
0
7mer
23616-23643
0.005
1
6mer
30819-30833
0.004
1
6mer
24852-24862
0.003
2
6mer
5115-5119
0.002
1
6mer
20970-20993
0.002
2
6mer
25374-25378
0.002
1
6mer
3214-3239
0.002
1
6mer
4464-4474
0.002
Not Conserved
6mer
21450-21475
0.002
1
6mer
18037-18051
0.002
0
6mer
30397-30422
0.001
Not Conserved
RP11-380B4.3
hsa-let-7b-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617901
Biotype: lincRNA
Gene id: ENSG00000277151
Gene Name: RP11-380B4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
427-446
0.020
0
7mer
4209-4223
0.008
1
7mer
2507-2528
0.006
1
6mer
1171-1181
0.003
1
6mer
3832-3847
0.003
0
6mer
3585-3610
0.002
1
RP11-483C6.1
hsa-let-7b-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000572358
Biotype: sense_intronic
Gene id: ENSG00000262119
Gene Name: RP11-483C6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
902-920
0.019
2
8mer
212-235
0.017
2
6mer
329-333
0.006
1
XLOC_013274
hsa-let-7b-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4549-4554
0.024
1
7mer
1984-2008
0.010
0
7mer
5285-5304
0.008
0
GJA9-MYCBP
hsa-let-7b-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037637.1
Biotype: sense
Gene id: NR_037637.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2120-2133
0.032
9
6mer
554-579
0.006
2
6mer
1785-1805
0.004
1
RP11-425D17.2
hsa-let-7b-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000621546
Biotype: sense_intronic
Gene id: ENSG00000273989
Gene Name: RP11-425D17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-49
0.023
2
6mer
578-582
0.010
2
6mer
140-160
0.009
1
CTA-520D8.2
hsa-let-7b-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441809
Biotype: lincRNA
Gene id: ENSG00000237445
Gene Name: CTA-520D8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
289-300
0.022
1
7mer
277-301
0.020
2
RP11-378A13.1
hsa-let-7b-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000562328
Biotype: sense_overlapping
Gene id: ENSG00000261338
Gene Name: RP11-378A13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
93-98
0.022
2
8mer
103-109
0.013
Not Conserved
6mer
43-58
0.007
1
RP11-318K12.2
hsa-let-7b-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000613429
Biotype: lincRNA
Gene id: ENSG00000275390
Gene Name: RP11-318K12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
469-481
0.024
Not Conserved
7mer
390-412
0.017
Not Conserved
RP11-318K12.2
hsa-let-7b-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000617090
Biotype: lincRNA
Gene id: ENSG00000275390
Gene Name: RP11-318K12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
282-294
0.026
Not Conserved
7mer
203-225
0.015
Not Conserved
AKT3-IT1
hsa-let-7b-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417120
Biotype: sense_intronic
Gene id: ENSG00000228939
Gene Name: AKT3-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
476-498
0.031
1
6mer
194-212
0.010
2
AP001464.4
hsa-let-7b-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000457565
Biotype: lincRNA
Gene id: ENSG00000229306
Gene Name: AP001464.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-41
0.023
Not Conserved
7mer
98-120
0.017
Not Conserved
LINC00475
hsa-let-7b-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000430945
Biotype: lincRNA
Gene id: ENSG00000225511
Gene Name: LINC00475
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
426-439
0.040
0
NNT-AS1
hsa-let-7b-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_073113.1
Biotype: antisense
Gene id: NR_073113.1 (gene)
Gene Name: NNT-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
255-268
0.018
1
7mer
148-153
0.012
1
7mer
724-740
0.010
1
DLX6-AS1
hsa-let-7b-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430027
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
15267-15282
0.011
8
7mer
4939-4957
0.008
3
8mer
6766-6793
0.006
0
8mer
722-740
0.004
1
6mer
8304-8315
0.003
2
7mer
1752-1767
0.003
1
6mer
8749-8767
0.002
Not Conserved
6mer
11276-11294
0.002
1
6mer
8021-8045
0.002
0
ZBED3-AS1
hsa-let-7b-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514640
Biotype: antisense
Gene id: ENSG00000250802
Gene Name: ZBED3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1123-1136
0.020
1
8mer
937-950
0.014
1
6mer
770-786
0.005
2
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