LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7b-3p


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Gene
miRNA
Score
DIANA Links
LINC01140
hsa-let-7b-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000590653
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3262-3285
0.059
11
6mer
1129-1141
0.003
3
LINC00475
hsa-let-7b-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000444476
Biotype: lincRNA
Gene id: ENSG00000225511
Gene Name: LINC00475
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
406-419
0.062
0
TTTY15
hsa-let-7b-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
638-645
0.039
0
6mer
1214-1218
0.012
0
7mer
3464-3476
0.010
0
LINC01140
hsa-let-7b-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484933
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3315-3338
0.058
11
6mer
1182-1194
0.003
3
XLOC_008878
hsa-let-7b-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017740
Biotype: transcript isomorph
Gene id: XLOC_008878
Gene Name: XLOC_008878
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-244
0.061
0
RP11-215H22.1
hsa-let-7b-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000561816
Biotype: lincRNA
Gene id: ENSG00000261340
Gene Name: RP11-215H22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-215
0.030
5
6mer
52-69
0.012
5
7mer
1628-1649
0.007
1
7mer
1596-1601
0.006
Not Conserved
6mer
1949-1971
0.006
0
RP11-411K7.1
hsa-let-7b-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431554
Biotype: lincRNA
Gene id: ENSG00000236740
Gene Name: RP11-411K7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2954-2981
0.033
2
7mer
2799-2813
0.013
1
6mer
2997-3012
0.005
0
6mer
126-142
0.005
0
6mer
528-538
0.004
1
RP11-96K19.4
hsa-let-7b-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562952
Biotype: sense_overlapping
Gene id: ENSG00000261654
Gene Name: RP11-96K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1069-1082
0.023
1
6mer
567-571
0.012
1
7mer
3464-3478
0.012
1
6mer
43-47
0.011
0
7mer
3451-3456
0.002
0
LOC284581
hsa-let-7b-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046097.1
Biotype: lincRNA
Gene id: NR_046097.1 (gene)
Gene Name: LOC284581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2033-2054
0.037
1
7mer
2476-2481
0.011
Not Conserved
6mer
1698-1714
0.010
1
RP11-442O1.3
hsa-let-7b-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000621095
Biotype: lincRNA
Gene id: ENSG00000275088
Gene Name: RP11-442O1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-40
0.059
5
RP11-363G2.4
hsa-let-7b-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000445646
Biotype: lincRNA
Gene id: ENSG00000229556
Gene Name: RP11-363G2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1767-1790
0.057
0
RP11-403N16.3
hsa-let-7b-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000565707
Biotype: lincRNA
Gene id: ENSG00000260564
Gene Name: RP11-403N16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2326-2331
0.029
8
6mer
2073-2092
0.015
11
6mer
634-651
0.008
8
6mer
310-325
0.004
1
LOC284581
hsa-let-7b-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046098.1
Biotype: lincRNA
Gene id: NR_046098.1 (gene)
Gene Name: LOC284581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1681-1702
0.035
1
7mer
2124-2129
0.010
Not Conserved
6mer
1346-1362
0.010
1
AC002519.8
hsa-let-7b-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570073
Biotype: sense_intronic
Gene id: ENSG00000259810
Gene Name: AC002519.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
645-657
0.039
1
7mer
2242-2251
0.011
0
6mer
1006-1030
0.005
0
XLOC_013504
hsa-let-7b-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027921
Biotype: transcript isomorph
Gene id: XLOC_013504
Gene Name: XLOC_013504
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
359-364
0.055
0
RP11-88L24.4
hsa-let-7b-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000582038
Biotype: antisense
Gene id: ENSG00000266413
Gene Name: RP11-88L24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1658-1670
0.029
4
7mer
175-191
0.017
3
6mer
635-639
0.005
6
6mer
1000-1017
0.003
4
RP11-196O16.1
hsa-let-7b-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609163
Biotype: lincRNA
Gene id: ENSG00000273477
Gene Name: RP11-196O16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2037-2041
0.007
0
6mer
2083-2093
0.006
0
6mer
2067-2071
0.005
0
6mer
2053-2060
0.005
0
6mer
2023-2027
0.005
0
6mer
1826-1841
0.004
0
6mer
1742-1746
0.003
0
6mer
1714-1718
0.003
0
6mer
1686-1690
0.003
0
6mer
1770-1774
0.003
0
6mer
1656-1660
0.003
0
6mer
1602-1606
0.003
0
6mer
1619-1623
0.003
0
LL22NC03-22D1.1
hsa-let-7b-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28162-28173
0.006
0
8mer
14819-14840
0.005
0
7mer
21982-21987
0.004
0
7mer
14467-14492
0.004
1
7mer
24906-24918
0.004
Not Conserved
6mer
18206-18226
0.004
5
7mer
16202-16222
0.003
0
7mer
28493-28512
0.003
0
7mer
16898-16925
0.003
2
6mer
3499-3503
0.002
1
7mer
23819-23840
0.002
1
6mer
22380-22384
0.002
0
6mer
12216-12242
0.002
1
6mer
7955-7973
0.001
0
6mer
19251-19273
0.001
0
6mer
22702-22712
0.001
Not Conserved
6mer
22526-22544
0.001
Not Conserved
6mer
15052-15078
0.001
Not Conserved
6mer
22797-22822
0.001
0
6mer
22840-22844
0.001
0
6mer
22406-22420
0.001
Not Conserved
6mer
22750-22760
0.001
Not Conserved
6mer
22428-22442
0.000
Not Conserved
AC006548.28
hsa-let-7b-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55749-55769
0.005
0
8mer
33702-33717
0.005
1
7mer
29910-29924
0.005
1
7mer
63651-63674
0.004
1
7mer
67447-67452
0.003
Not Conserved
7mer
55110-55117
0.003
1
6mer
60295-60321
0.003
1
6mer
44395-44399
0.002
1
6mer
48485-48503
0.002
Not Conserved
6mer
67307-67325
0.002
0
9mer
43284-43304
0.002
Not Conserved
6mer
51424-51428
0.002
Not Conserved
6mer
80132-80152
0.002
0
6mer
29678-29700
0.002
1
6mer
76734-76754
0.002
0
6mer
27633-27651
0.002
1
6mer
53288-53306
0.002
Not Conserved
6mer
71046-71050
0.002
Not Conserved
6mer
77918-77939
0.001
Not Conserved
6mer
5471-5492
0.001
0
6mer
52684-52702
0.001
Not Conserved
6mer
38712-38724
0.001
0
XLOC_010267
hsa-let-7b-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020228
Biotype: transcript isomorph
Gene id: XLOC_010267
Gene Name: XLOC_010267
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7b-3p
Sequence: cuauacaaccuacugccuuccc
MirBase ID: MIMAT0004482
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-61
0.051
1
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