LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-940


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-54O7.3
hsa-miR-940
0.379
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000609207
Biotype: retained_intron
Gene id: ENSG00000223764
Gene Name: RP11-54O7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
1:918967-918999
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-552M11.4
hsa-miR-940
0.398
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000416099
Biotype: sense_overlapping
Gene id: ENSG00000243960
Gene Name: RP11-552M11.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
1:111441172-111441200
exon
HITS-CLIP
DIRECT
LncBasev2
1:111441172-111441200
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-579D7.8
hsa-miR-940
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000605409
Biotype: processed_pseudogene
Gene id: ENSG00000271547
Gene Name: RP11-579D7.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
12:48800553-48800581
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-661A12.4
hsa-miR-940
0.702
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000517300
Biotype: antisense
Gene id: ENSG00000254144
Gene Name: RP11-661A12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
8:143542367-143542395
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-672L10.2
hsa-miR-940
0.858
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000581719
Biotype: antisense
Gene id: ENSG00000265179
Gene Name: RP11-672L10.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
18:906190-906218
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-715J22.2
hsa-miR-940
0.619
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000563775
Biotype: antisense
Gene id: ENSG00000259895
Gene Name: RP11-715J22.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
16:2465742-2465770
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-834C11.4
hsa-miR-940
0.469
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000508564
Biotype: lincRNA
Gene id: ENSG00000250742
Gene Name: RP11-834C11.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
12:54132064-54132092
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-86K22.1
hsa-miR-940
-
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000558410
Biotype: processed_pseudogene
Gene id: ENSG00000259477
Gene Name: RP11-86K22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
15:57979821-57979849
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-193H18.2
hsa-miR-940
0.555
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000588041
Biotype: lincRNA
Gene id: ENSG00000267194
Gene Name: RP1-193H18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
17:69552740-69552768
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-239B22.5
hsa-miR-940
0.735
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000568280
Biotype: antisense
Gene id: ENSG00000260196
Gene Name: RP1-239B22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRN.
Location
Region
Method
Result
Validation Type
Source
11:17381058-17381086
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-244F24.1
hsa-miR-940
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000606796
Biotype: antisense
Gene id: ENSG00000271857
Gene Name: RP1-244F24.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
6:45421867-45421895
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-605O3.4
hsa-miR-940
0.551
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000548468
Biotype: antisense
Gene id: ENSG00000272368
Gene Name: RP4-605O3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
12:50112229-50112261
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-717I23.3
hsa-miR-940
0.389
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000421202
Biotype: lincRNA
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
1:93338504-93338532
exon
HITS-CLIP
DIRECT
LncBasev2
RP5-1074L1.4
hsa-miR-940
0.823
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000609909
Biotype: antisense
Gene id: ENSG00000273373
Gene Name: RP5-1074L1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
1:110370267-110370295
exon
HITS-CLIP
DIRECT
LncBasev2
RP5-881P19.7
hsa-miR-940
0.672
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000623471
Biotype: lincRNA
Gene id: ENSG00000276255
Gene Name: RP5-881P19.7
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
1:228075341-228075369
exon
HITS-CLIP
DIRECT
LncBasev2
RP6-24A23.7
hsa-miR-940
0.489
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000564206
Biotype: sense_overlapping
Gene id: ENSG00000261409
Gene Name: RP6-24A23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
X:108722440-108722468
exon
HITS-CLIP
DIRECT
LncBasev2
X:108721765-108721793
exon
HITS-CLIP
DIRECT
LncBasev2
X:108721649-108721677
exon
HITS-CLIP
DIRECT
LncBasev2
RPL18AP3
hsa-miR-940
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000462885
Biotype: processed_pseudogene
Gene id: ENSG00000213442
Gene Name: RPL18AP3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:104265331-104265359
exon
HITS-CLIP
DIRECT
LncBasev2
RPLP0P6
hsa-miR-940
-
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000394878
Biotype: processed_pseudogene
Gene id: ENSG00000213553
Gene Name: RPLP0P6
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:38482063-38482091
exon
HITS-CLIP
DIRECT
LncBasev2
SLC16A1-AS1
hsa-miR-940
0.596
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000428411
Biotype: antisense
Gene id: ENSG00000226419
Gene Name: SLC16A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
1:112960484-112960512
exon
HITS-CLIP
DIRECT
LncBasev2
SLC16A1-AS1
hsa-miR-940
0.553
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: NR_103743.1
Biotype: antisense
Gene id: NR_103743.1 (gene)
Gene Name: SLC16A1-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
1:112960484-112960512
exon
HITS-CLIP
DIRECT
LncBasev2
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