LncBase Experimental v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-940


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
NEAT1
hsa-miR-940
0.600
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: NR_028272.1
Biotype: lincRNA
Gene id: NR_028272.1 (gene)
Gene Name: NEAT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
11:65424418-65424446
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424480-65424508
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426039-65426067
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426070-65426098
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424480-65424508
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426039-65426067
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423026-65423054
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424418-65424446
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426039-65426067
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426070-65426098
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424418-65424446
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424559-65424587
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424480-65424508
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423026-65423054
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426070-65426098
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426039-65426067
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424480-65424508
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424418-65424446
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424480-65424508
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426039-65426067
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426070-65426098
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423026-65423054
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426070-65426098
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424418-65424446
exon
HITS-CLIP
DIRECT
LncBasev2
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRN.
Location
Region
Method
Result
Validation Type
Source
11:65424559-65424587
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65426070-65426098
exon
HITS-CLIP
DIRECT
LncBasev2
PAICSP4
hsa-miR-940
-
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000517543
Biotype: processed_pseudogene
Gene id: ENSG00000254244
Gene Name: PAICSP4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRNA.
Location
Region
Method
Result
Validation Type
Source
8:4787514-4787542
exon
HITS-CLIP
DIRECT
LncBasev2
PLEKHM1P
hsa-miR-940
-
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000582986
Biotype: processed_transcript
Gene id: ENSG00000214176
Gene Name: PLEKHM1P
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
17:64783104-64783132
exon
HITS-CLIP
DIRECT
LncBasev2
PSAT1P3
hsa-miR-940
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000439132
Biotype: processed_pseudogene
Gene id: ENSG00000230787
Gene Name: PSAT1P3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:79056001-79056029
exon
HITS-CLIP
DIRECT
LncBasev2
PVRIG2P
hsa-miR-940
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000435460
Biotype: transcribed_unprocessed_pseudogene
Gene id: ENSG00000235333
Gene Name: PVRIG2P
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
7:100353509-100353537
exon
HITS-CLIP
DIRECT
LncBasev2
RAB4B-EGLN2
hsa-miR-940
0.658
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: NR_037791.1
Biotype: sense
Gene id: NR_037791.1 (gene)
Gene Name: RAB4B-EGLN2
UCSC graphic: -
Expression: -

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
19:40800416-40800444
exon
HITS-CLIP
DIRECT
LncBasev2
19:40800416-40800444
exon
HITS-CLIP
DIRECT
LncBasev2
19:40807956-40807984
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-1055B8.4
hsa-miR-940
0.539
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000571724
Biotype: lincRNA
Gene id: ENSG00000262877
Gene Name: RP11-1055B8.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
17:81388205-81388233
exon
HITS-CLIP
DIRECT
LncBasev2
17:81389022-81389050
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-119K6.6
hsa-miR-940
0.437
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000432120
Biotype: sense_overlapping
Gene id: ENSG00000244332
Gene Name: RP11-119K6.6
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:94610809-94610841
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-160C18.2
hsa-miR-940
-
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000564933
Biotype: transcribed_unprocessed_pseudogene
Gene id: ENSG00000261303
Gene Name: RP11-160C18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
15:78732550-78732578
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-268J15.5
hsa-miR-940
0.832
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000373137
Biotype: antisense
Gene id: ENSG00000116883
Gene Name: RP11-268J15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
1:36328004-36328032
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-278C7.1
hsa-miR-940
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000550917
Biotype: processed_pseudogene
Gene id: ENSG00000257511
Gene Name: RP11-278C7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:32726931-32726959
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-285G1.14
hsa-miR-940
0.386
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000609898
Biotype: sense_intronic
Gene id: ENSG00000273363
Gene Name: RP11-285G1.14
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
10:44959133-44959161
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-2C24.4
hsa-miR-940
-
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000483578
Biotype: processed_transcript
Gene id: ENSG00000260899
Gene Name: RP11-2C24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
16:30748453-30748481
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-386G11.5
hsa-miR-940
0.358
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000547866
Biotype: antisense
Gene id: ENSG00000257913
Gene Name: RP11-386G11.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
12:49018472-49018500
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-420A23.1
hsa-miR-940
0.420
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000511497
Biotype: lincRNA
Gene id: ENSG00000251432
Gene Name: RP11-420A23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
4:128483421-128483449
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-44M6.7
hsa-miR-940
0.631
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000485071
Biotype: retained_intron
Gene id: ENSG00000274272
Gene Name: RP11-44M6.7
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
7:100574844-100574872
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-458F8.4
hsa-miR-940
1.000
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000610177
Biotype: lincRNA
Gene id: ENSG00000273142
Gene Name: RP11-458F8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
7:66904260-66904288
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-46A10.5
hsa-miR-940
0.620
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000358073
Biotype: antisense
Gene id: ENSG00000243155
Gene Name: RP11-46A10.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
1:180976291-180976319
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-473M20.7
hsa-miR-940
0.998
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000573130
Biotype: antisense
Gene id: ENSG00000261971
Gene Name: RP11-473M20.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
16:3055974-3056002
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-478J18.2
hsa-miR-940
0.397
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000610409
Biotype: antisense
Gene id: ENSG00000274895
Gene Name: RP11-478J18.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
1:213985429-213985457
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by:
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