LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-940


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
IPO11-LRRC70
hsa-miR-940
0.560
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: NR_073584.1
Biotype: sense
Gene id: NR_073584.1 (gene)
Gene Name: IPO11-LRRC70
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRN.
Location
Region
Method
Result
Validation Type
Source
5:62627680-62627708
exon
HITS-CLIP
DIRECT
LncBasev2
KCNQ1OT1
hsa-miR-940
0.999
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
11:2687594-2687622
exon
HITS-CLIP
DIRECT
LncBasev2
11:2665200-2665228
exon
HITS-CLIP
DIRECT
LncBasev2
11:2691711-2691762
exon
HITS-CLIP
DIRECT
LncBasev2
11:2670579-2670607
exon
HITS-CLIP
DIRECT
LncBasev2
11:2683050-2683078
exon
HITS-CLIP
DIRECT
LncBasev2
11:2693811-2693839
exon
HITS-CLIP
DIRECT
LncBasev2
11:2691711-2691762
exon
HITS-CLIP
DIRECT
LncBasev2
11:2693811-2693839
exon
HITS-CLIP
DIRECT
LncBasev2
11:2697127-2697155
exon
HITS-CLIP
DIRECT
LncBasev2
LINC00355
hsa-miR-940
0.876
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000456627
Biotype: lincRNA
Gene id: ENSG00000227674
Gene Name: LINC00355
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:64034473-64034501
exon
HITS-CLIP
DIRECT
LncBasev2
LINC01000
hsa-miR-940
0.981
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: NR_024368.1
Biotype: lincRNA
Gene id: NR_024368.1 (gene)
Gene Name: LINC01000
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
7:128659183-128659211
exon
HITS-CLIP
DIRECT
LncBasev2
LINC01237
hsa-miR-940
0.998
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000430555
Biotype: lincRNA
Gene id: ENSG00000233806
Gene Name: LINC01237
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
2:241966272-241966304
exon
HITS-CLIP
DIRECT
LncBasev2
LINC01485
hsa-miR-940
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000520324
Biotype: lincRNA
Gene id: ENSG00000254211
Gene Name: LINC01485
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
5:173788373-173788401
exon
HITS-CLIP
DIRECT
LncBasev2
LLNLR-304A6.2
hsa-miR-940
-
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: ENST00000615016
Biotype: processed_pseudogene
Gene id: ENSG00000275468
Gene Name: LLNLR-304A6.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
19:2014232-2014260
exon
HITS-CLIP
DIRECT
LncBasev2
LOC100507472
hsa-miR-940
0.613
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: NR_045387.1
Biotype: sense
Gene id: NR_045387.1 (gene)
Gene Name: LOC100507472
UCSC graphic: -
Expression: -

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
15:101309158-101309186
exon
HITS-CLIP
DIRECT
LncBasev2
15:101309158-101309186
exon
HITS-CLIP
DIRECT
LncBasev2
LRRC75A-AS1
hsa-miR-940
0.494
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000497774
Biotype: retained_intron
Gene id: ENSG00000175061
Gene Name: LRRC75A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
17:16441779-16441807
exon
HITS-CLIP
DIRECT
LncBasev2
17:16439603-16439631
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:16441779-16441807
exon
HITS-CLIP
DIRECT
LncBasev2
MALAT1
hsa-miR-940
0.593
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
11:65503427-65503455
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504770-65504798
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503427-65503455
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504770-65504798
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504770-65504798
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503427-65503455
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504770-65504798
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504770-65504798
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503427-65503455
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503427-65503455
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS27a
IP
Tested Cell Line: HS27a
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65504770-65504798
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503427-65503455
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503427-65503455
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504770-65504798
exon
HITS-CLIP
DIRECT
LncBasev2
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRN.
Location
Region
Method
Result
Validation Type
Source
11:65504770-65504798
exon
HITS-CLIP
DIRECT
LncBasev2
MIR222HG
hsa-miR-940
0.617
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000602507
Biotype: lincRNA
Gene id: ENSG00000270069
Gene Name: MIR222HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
X:45768845-45768873
exon
HITS-CLIP
DIRECT
LncBasev2
MIR4697HG
hsa-miR-940
0.744
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: NR_024344.1
Biotype: lincRNA
Gene id: NR_024344.1 (gene)
Gene Name: MIR4697HG
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
11:133900822-133900850
exon
HITS-CLIP
DIRECT
LncBasev2
MIR663AHG
hsa-miR-940
0.524
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000427348
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:26209176-26209204
exon
HITS-CLIP
DIRECT
LncBasev2
20:26209176-26209204
exon
HITS-CLIP
DIRECT
LncBasev2
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
20:26209176-26209204
exon
HITS-CLIP
DIRECT
LncBasev2
20:26209176-26209204
exon
HITS-CLIP
DIRECT
LncBasev2
20:26209176-26209204
exon
HITS-CLIP
DIRECT
LncBasev2
20:26209176-26209204
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:26209176-26209204
exon
HITS-CLIP
DIRECT
LncBasev2
MIR6723
hsa-miR-940
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000414273
Biotype: unprocessed_pseudogene
Gene id: ENSG00000237973
Gene Name: MIR6723
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
1:631440-631468
exon
HITS-CLIP
DIRECT
LncBasev2
MMP24-AS1
hsa-miR-940
0.671
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000435366
Biotype: antisense
Gene id: ENSG00000126005
Gene Name: MMP24-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
20:35276721-35276753
exon
HITS-CLIP
DIRECT
LncBasev2
MMP24-AS1
hsa-miR-940
0.625
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000424358
Biotype: antisense
Gene id: ENSG00000126005
Gene Name: MMP24-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
20:35277348-35277376
exon
HITS-CLIP
DIRECT
LncBasev2
MTATP6P1
hsa-miR-940
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000514057
Biotype: unprocessed_pseudogene
Gene id: ENSG00000248527
Gene Name: MTATP6P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRNA.
Location
Region
Method
Result
Validation Type
Source
1:633935-633963
exon
HITS-CLIP
DIRECT
LncBasev2
MTND4P12
hsa-miR-940
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000498999
Biotype: processed_pseudogene
Gene id: ENSG00000247627
Gene Name: MTND4P12
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRNA.
Location
Region
Method
Result
Validation Type
Source
5:134927251-134927279
exon
HITS-CLIP
DIRECT
LncBasev2
MZF1-AS1
hsa-miR-940
0.575
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: ENST00000600534
Biotype: antisense
Gene id: ENSG00000267858
Gene Name: MZF1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
19:58559235-58559263
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-940
0.905
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-940
Sequence: aaggcagggcccccgcucccc
MirBase ID: MIMAT0004983
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
11:65427126-65427154
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426039-65426067
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426070-65426098
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424480-65424508
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424418-65424446
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427982-65428010
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424418-65424446
exon
HITS-CLIP
DIRECT
LncBasev2
11:65430184-65430212
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426039-65426067
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426070-65426098
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424480-65424508
exon
HITS-CLIP
DIRECT
LncBasev2
11:65428766-65428794
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423026-65423054
exon
HITS-CLIP
DIRECT
LncBasev2
11:65430274-65430302
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424418-65424446
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426039-65426067
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426070-65426098
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426039-65426067
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424480-65424508
exon
HITS-CLIP
DIRECT
LncBasev2
11:65428020-65428048
exon
HITS-CLIP
DIRECT
LncBasev2
11:65430274-65430302
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444979-65445007
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427126-65427154
exon
HITS-CLIP
DIRECT
LncBasev2
11:65428766-65428794
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423026-65423054
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424418-65424446
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426987-65427015
exon
HITS-CLIP
DIRECT
LncBasev2
11:65436185-65436213
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427982-65428010
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426551-65426579
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426070-65426098
exon
HITS-CLIP
DIRECT
LncBasev2
11:65445353-65445381
exon
HITS-CLIP
DIRECT
LncBasev2
11:65430274-65430302
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424559-65424587
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427982-65428010
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426551-65426579
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426070-65426098
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424418-65424446
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426551-65426579
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427126-65427154
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426039-65426067
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424480-65424508
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423026-65423054
exon
HITS-CLIP
DIRECT
LncBasev2
11:65428020-65428048
exon
HITS-CLIP
DIRECT
LncBasev2
11:65430184-65430212
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424480-65424508
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427982-65428010
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65445053-65445081
exon
HITS-CLIP
DIRECT
LncBasev2
11:65428020-65428048
exon
HITS-CLIP
DIRECT
LncBasev2
11:65429311-65429339
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426070-65426098
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427126-65427154
exon
HITS-CLIP
DIRECT
LncBasev2
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRN.
Location
Region
Method
Result
Validation Type
Source
11:65424559-65424587
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by:
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