Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p

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Filters
Gene
miRNA
Pr. score
Methods
RP6-24A23.7
hsa-miR-92a-3p
IP

Gene Details
Chromosome: X
Transcript: ENST00000564206
Biotype: sense_overlapping
Gene id: ENSG00000261409
Gene Name: RP6-24A23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
X:108724275-108724303
exon
HITS-CLIP
DIRECT
LncBasev2
RPL17P20
hsa-miR-92a-3p
-
IP

Gene Details
Chromosome: 4
Transcript: ENST00000461464
Biotype: processed_pseudogene
Gene id: ENSG00000241250
Gene Name: RPL17P20
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:56710611-56710639
exon
HITS-CLIP
DIRECT
LncBasev2
RPL17P22
hsa-miR-92a-3p
-
IP

Gene Details
Chromosome: 5
Transcript: ENST00000467688
Biotype: processed_pseudogene
Gene id: ENSG00000243592
Gene Name: RPL17P22
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:56137528-56137556
exon
HITS-CLIP
DIRECT
LncBasev2
RPL17P25
hsa-miR-92a-3p
-
IP

Gene Details
Chromosome: 6
Transcript: ENST00000404330
Biotype: processed_pseudogene
Gene id: ENSG00000219547
Gene Name: RPL17P25
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:80373990-80374018
exon
HITS-CLIP
DIRECT
LncBasev2
RPL17P33
hsa-miR-92a-3p
-
IP

Gene Details
Chromosome: 8
Transcript: ENST00000498256
Biotype: processed_pseudogene
Gene id: ENSG00000243844
Gene Name: RPL17P33
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:29632641-29632669
exon
HITS-CLIP
DIRECT
LncBasev2
RPL17P43
hsa-miR-92a-3p
-
IP

Gene Details
Chromosome: 17
Transcript: ENST00000422360
Biotype: processed_pseudogene
Gene id: ENSG00000228331
Gene Name: RPL17P43
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:19497526-19497554
exon
HITS-CLIP
DIRECT
LncBasev2
RPL30P4
hsa-miR-92a-3p
-
IP

Gene Details
Chromosome: 3
Transcript: ENST00000429309
Biotype: processed_pseudogene
Gene id: ENSG00000237676
Gene Name: RPL30P4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:32635368-32635396
exon
HITS-CLIP
DIRECT
LncBasev2
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:32635368-32635396
exon
HITS-CLIP
DIRECT
LncBasev2
RPS13P2
hsa-miR-92a-3p
-
IP

Gene Details
Chromosome: 1
Transcript: ENST00000437890
Biotype: processed_pseudogene
Gene id: ENSG00000228929
Gene Name: RPS13P2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:52772170-52772198
exon
HITS-CLIP
DIRECT
LncBasev2
RPS20P33
hsa-miR-92a-3p
-
IP

Gene Details
Chromosome: 14
Transcript: ENST00000476081
Biotype: processed_pseudogene
Gene id: ENSG00000242085
Gene Name: RPS20P33
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
14:105374673-105374701
exon
HITS-CLIP
DIRECT
LncBasev2
RRN3P3
hsa-miR-92a-3p
-
IP

Gene Details
Chromosome: 16
Transcript: ENST00000551766
Biotype: processed_transcript
Gene id: ENSG00000257122
Gene Name: RRN3P3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: ESC
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:22419217-22419245
exon
PAR-CLIP
DIRECT
LncBasev2
SERF2-C15ORF63
hsa-miR-92a-3p
IP

Gene Details
Chromosome: 15
Transcript: NR_037673.1
Biotype: sense
Gene id: NR_037673.1 (gene)
Gene Name: SERF2-C15ORF63
UCSC graphic: -
Expression: -

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: TZMBL
Category: Cancer/Malignant
Experimental Condition: shRNs against HIV-1
Location
Region
Method
Result
Validation Type
Source
15:43801823-43801851
exon
HITS-CLIP
DIRECT
LncBasev2
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:43801823-43801851
exon
PAR-CLIP
DIRECT
LncBasev2
SLC2A3P1
hsa-miR-92a-3p
-
IP

Gene Details
Chromosome: 5
Transcript: ENST00000519666
Biotype: processed_pseudogene
Gene id: ENSG00000253861
Gene Name: SLC2A3P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:168552549-168552577
exon
HITS-CLIP
DIRECT
LncBasev2
SLMO2-ATP5E
hsa-miR-92a-3p
IP

Gene Details
Chromosome: 20
Transcript: NR_037929.1
Biotype: sense
Gene id: NR_037929.1 (gene)
Gene Name: SLMO2-ATP5E
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:59038601-59038629
exon
HITS-CLIP
DIRECT
LncBasev2
SNHG1
hsa-miR-92a-3p
IP

Gene Details
Chromosome: 11
Transcript: ENST00000538654
Biotype: retained_intron
Gene id: ENSG00000255717
Gene Name: SNHG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
11:62853534-62853562
exon
HITS-CLIP
DIRECT
LncBasev2
SNHG12
hsa-miR-92a-3p
-
IP

Gene Details
Chromosome: 1
Transcript: ENST00000461448
Biotype: retained_intron
Gene id: ENSG00000197989
Gene Name: SNHG12
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:28580413-28580441
exon
HITS-CLIP
DIRECT
LncBasev2
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
1:28580413-28580441
exon
HITS-CLIP
DIRECT
LncBasev2
SNHG5
hsa-miR-92a-3p
IP

Gene Details
Chromosome: 6
Transcript: ENST00000369605
Biotype: lincRNA
Gene id: ENSG00000203875
Gene Name: SNHG5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:85678278-85678306
exon
HITS-CLIP
DIRECT
LncBasev2
SNORD91A
hsa-miR-92a-3p
IP

Gene Details
Chromosome: 17
Transcript: ENST00000609620
Biotype: sense_intronic
Gene id: ENSG00000212163
Gene Name: SNORD91A
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
17:2330304-2330332
exon
HITS-CLIP
DIRECT
LncBasev2
17:2330304-2330332
exon
HITS-CLIP
DIRECT
LncBasev2
Mammary Gland
MDAMB231
IP
Tested Cell Line: MDAMB231
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:2330304-2330332
exon
HITS-CLIP
DIRECT
LncBasev2
17:2330304-2330332
exon
HITS-CLIP
DIRECT
LncBasev2
Tested Cell Line: ESC
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:2330304-2330332
exon
PAR-CLIP
DIRECT
LncBasev2
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:2330304-2330332
exon
HITS-CLIP
DIRECT
LncBasev2
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:2330304-2330332
exon
HITS-CLIP
DIRECT
LncBasev2
Tested Cell Line: TZMBL
Category: Cancer/Malignant
Experimental Condition: shRNs against HIV-1
Location
Region
Method
Result
Validation Type
Source
17:2330304-2330332
exon
HITS-CLIP
DIRECT
LncBasev2
ST13P15
hsa-miR-92a-3p
-
IP

Gene Details
Chromosome: 3
Transcript: ENST00000460666
Biotype: processed_pseudogene
Gene id: ENSG00000243759
Gene Name: ST13P15
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:143517570-143517598
exon
HITS-CLIP
DIRECT
LncBasev2
SVIL-AS1
hsa-miR-92a-3p
IP

Gene Details
Chromosome: 10
Transcript: ENST00000427063
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:29421249-29421277
exon
HITS-CLIP
DIRECT
LncBasev2
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:29421249-29421277
exon
HITS-CLIP
DIRECT
LncBasev2
THUMPD3-AS1
hsa-miR-92a-3p
IP

Gene Details
Chromosome: 3
Transcript: ENST00000468186
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
3:9396467-9396495
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by: