LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-92a-3p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-298J20.4
hsa-miR-92a-3p
0.460
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000508096
Biotype: sense_overlapping
Gene id: ENSG00000249456
Gene Name: RP11-298J20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:124942531-124942559
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-305K5.1
hsa-miR-92a-3p
0.490
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000609190
Biotype: antisense
Gene id: ENSG00000272990
Gene Name: RP11-305K5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Skalsky Rebecca L. et al. 2012
LCLBACD3
IP
Tested Cell Line: LCLBACD3
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:156524007-156524035
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-332E4.1
hsa-miR-92a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000442158
Biotype: processed_pseudogene
Gene id: ENSG00000214748
Gene Name: RP11-332E4.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:137324950-137324978
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-420K10.1
hsa-miR-92a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000603626
Biotype: processed_pseudogene
Gene id: ENSG00000270874
Gene Name: RP11-420K10.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Whisnant Adam W et al. 2013
Bone Marrow
C8166
IP
Tested Cell Line: C8166
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:86855890-86855918
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-43F13.1
hsa-miR-92a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000507841
Biotype: processed_transcript
Gene id: ENSG00000188002
Gene Name: RP11-43F13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
5:1599791-1599819
exon
HITS-CLIP
DIRECT
LncBasev2
5:1599791-1599819
exon
HITS-CLIP
DIRECT
LncBasev2
5:1599791-1599819
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-445F12.1
hsa-miR-92a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000621428
Biotype: antisense
Gene id: ENSG00000277268
Gene Name: RP11-445F12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
17:36933041-36933069
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-507E23.1
hsa-miR-92a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000489251
Biotype: processed_pseudogene
Gene id: ENSG00000242951
Gene Name: RP11-507E23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:75595792-75595820
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-515E23.1
hsa-miR-92a-3p
0.654
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000577089
Biotype: lincRNA
Gene id: ENSG00000261873
Gene Name: RP11-515E23.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
17:55468136-55468164
exon
HITS-CLIP
DIRECT
LncBasev2
17:55468136-55468164
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-531A24.3
hsa-miR-92a-3p
0.567
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000564832
Biotype: lincRNA
Gene id: ENSG00000260838
Gene Name: RP11-531A24.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:72948545-72948573
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-567G24.1
hsa-miR-92a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000451892
Biotype: processed_pseudogene
Gene id: ENSG00000228818
Gene Name: RP11-567G24.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Whisnant Adam W et al. 2013
Cervix
TZMBL
IP
Tested Cell Line: TZMBL
Category: Cancer/Malignant
Experimental Condition: shRNAs against HIV-1
Location
Region
Method
Result
Validation Type
Source
1:240143162-240143190
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-611O2.3
hsa-miR-92a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000537570
Biotype: processed_pseudogene
Gene id: ENSG00000256664
Gene Name: RP11-611O2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:68842022-68842050
exon
PAR-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:68842022-68842050
exon
HITS-CLIP
DIRECT
LncBasev2
Sebastian Memczak et al. 2013
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:68842022-68842050
exon
PAR-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:68842022-68842050
exon
HITS-CLIP
DIRECT
LncBasev2
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
12:68842022-68842050
exon
HITS-CLIP
DIRECT
LncBasev2
12:68842022-68842050
exon
HITS-CLIP
DIRECT
LncBasev2
12:68842022-68842050
exon
HITS-CLIP
DIRECT
LncBasev2
Inna Lipchina et al. 2011
Embryo
ESC
IP
Tested Cell Line: ESC
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:68842022-68842050
exon
PAR-CLIP
DIRECT
LncBasev2
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRNA.
Location
Region
Method
Result
Validation Type
Source
12:68842022-68842050
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-674E16.4
hsa-miR-92a-3p
0.787
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000399242
Biotype: sense_intronic
Gene id: ENSG00000214919
Gene Name: RP11-674E16.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
3:155742422-155742450
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-67L2.2
hsa-miR-92a-3p
0.970
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000610128
Biotype: lincRNA
Gene id: ENSG00000273033
Gene Name: RP11-67L2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
3:122892371-122892399
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-77H9.2
hsa-miR-92a-3p
0.424
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000565934
Biotype: antisense
Gene id: ENSG00000260276
Gene Name: RP11-77H9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:8848081-8848109
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-791G16.4
hsa-miR-92a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000506227
Biotype: processed_pseudogene
Gene id: ENSG00000248113
Gene Name: RP11-791G16.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:82580937-82580965
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-797A18.6
hsa-miR-92a-3p
0.695
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000602975
Biotype: sense_intronic
Gene id: ENSG00000269951
Gene Name: RP11-797A18.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
15:77068185-77068213
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-959I15.1
hsa-miR-92a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000507871
Biotype: processed_pseudogene
Gene id: ENSG00000250727
Gene Name: RP11-959I15.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Hafner M. et al. 2010
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:124141925-124141953
exon
PAR-CLIP
DIRECT
LncBasev2
RP1-234P15.4
hsa-miR-92a-3p
0.408
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000607221
Biotype: lincRNA
Gene id: ENSG00000225793
Gene Name: RP1-234P15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:75291392-75291420
exon
PAR-CLIP
DIRECT
LncBasev2
RP1-89D4.1
hsa-miR-92a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000473603
Biotype: processed_pseudogene
Gene id: ENSG00000241255
Gene Name: RP1-89D4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:33237394-33237422
exon
HITS-CLIP
DIRECT
LncBasev2
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:33237394-33237422
exon
PAR-CLIP
DIRECT
LncBasev2
RP5-1112D6.4
hsa-miR-92a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000444259
Biotype: antisense
Gene id: ENSG00000230177
Gene Name: RP5-1112D6.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary

miRNA Details
Name: hsa-miR-92a-3p
Sequence: uauugcacuugucccggccugu
MirBase ID: MIMAT0000092
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:111278698-111278726
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by:
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