LncBase Experimental v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-571F15.2
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000439099
Biotype: processed_pseudogene
Gene id: ENSG00000227383
Gene Name: RP11-571F15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:34191726-34191754
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-587D21.1
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000476147
Biotype: processed_pseudogene
Gene id: ENSG00000240036
Gene Name: RP11-587D21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:27581723-27581751
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-611O2.3
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000537570
Biotype: processed_pseudogene
Gene id: ENSG00000256664
Gene Name: RP11-611O2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:68842213-68842241
exon
HITS-CLIP
DIRECT
LncBasev2
Farazi Thalia A et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:68842213-68842241
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-655M14.13
hsa-miR-375
0.402
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000533311
Biotype: lincRNA
Gene id: ENSG00000255318
Gene Name: RP11-655M14.13
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
11:67618756-67618784
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-69M1.3
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000429127
Biotype: processed_pseudogene
Gene id: ENSG00000255964
Gene Name: RP11-69M1.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:8015219-8015247
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-727A23.5
hsa-miR-375
0.529
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000624533
Biotype: TEC
Gene id: ENSG00000247137
Gene Name: RP11-727A23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:83192298-83192326
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-747H7.3
hsa-miR-375
0.456
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000565058
Biotype: sense_intronic
Gene id: ENSG00000260711
Gene Name: RP11-747H7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:91757348-91757376
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-81A1.6
hsa-miR-375
0.522
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000618835
Biotype: sense_intronic
Gene id: ENSG00000278600
Gene Name: RP11-81A1.6
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
15:79921547-79921575
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-228H13.1
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000600955
Biotype: processed_pseudogene
Gene id: ENSG00000227311
Gene Name: RP1-228H13.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:40333325-40333353
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-278E11.3
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000325612
Biotype: processed_pseudogene
Gene id: ENSG00000180211
Gene Name: RP1-278E11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:39958510-39958538
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-281H8.3
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000406807
Biotype: processed_pseudogene
Gene id: ENSG00000219553
Gene Name: RP1-281H8.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:149491842-149491870
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-701O16.5
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000520729
Biotype: processed_pseudogene
Gene id: ENSG00000253183
Gene Name: RP4-701O16.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:139503415-139503443
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-814D15.2
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000429552
Biotype: processed_pseudogene
Gene id: ENSG00000225224
Gene Name: RP4-814D15.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
7:157192789-157192817
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:157192789-157192817
exon
HITS-CLIP
DIRECT
LncBasev2
RP5-894D12.4
hsa-miR-375
0.689
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000603529
Biotype: lincRNA
Gene id: ENSG00000271234
Gene Name: RP5-894D12.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:170297994-170298022
exon
HITS-CLIP
DIRECT
LncBasev2
RPL21P129
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: ENST00000491732
Biotype: processed_pseudogene
Gene id: ENSG00000242636
Gene Name: RPL21P129
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
19:7750889-7750917
exon
HITS-CLIP
DIRECT
LncBasev2
RPL21P17
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000397467
Biotype: processed_pseudogene
Gene id: ENSG00000214073
Gene Name: RPL21P17
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:1905856-1905884
exon
HITS-CLIP
DIRECT
LncBasev2
RPL24P8
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000446071
Biotype: processed_pseudogene
Gene id: ENSG00000236801
Gene Name: RPL24P8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:70217488-70217516
exon
HITS-CLIP
DIRECT
LncBasev2
RPL35AP19
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000469425
Biotype: processed_pseudogene
Gene id: ENSG00000239872
Gene Name: RPL35AP19
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:121380272-121380300
exon
HITS-CLIP
DIRECT
LncBasev2
RPL3P4
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000417615
Biotype: processed_pseudogene
Gene id: ENSG00000232573
Gene Name: RPL3P4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:98973185-98973213
exon
HITS-CLIP
DIRECT
LncBasev2
RPL3P7
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000417878
Biotype: processed_pseudogene
Gene id: ENSG00000225093
Gene Name: RPL3P7
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:108004663-108004691
exon
HITS-CLIP
DIRECT
LncBasev2
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