LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-142E9.1
hsa-miR-375
0.528
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000621575
Biotype: sense_intronic
Gene id: ENSG00000276672
Gene Name: RP11-142E9.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:33848459-33848487
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-14K2.1
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000468671
Biotype: processed_pseudogene
Gene id: ENSG00000241932
Gene Name: RP11-14K2.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:12881339-12881367
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-152N13.16
hsa-miR-375
0.411
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000608444
Biotype: antisense
Gene id: ENSG00000272599
Gene Name: RP11-152N13.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
10:73125032-73125060
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-166D19.1
hsa-miR-375
0.402
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000531381
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:122091020-122091048
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-166D19.1
hsa-miR-375
0.423
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000531629
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
11:122101145-122101173
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-206M11.7
hsa-miR-375
0.813
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000489011
Biotype: antisense
Gene id: ENSG00000244468
Gene Name: RP11-206M11.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:149333597-149333625
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-212P7.3
hsa-miR-375
0.650
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000462662
Biotype: processed_transcript
Gene id: ENSG00000273184
Gene Name: RP11-212P7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
7:128479287-128479315
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-304F15.4
hsa-miR-375
0.632
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000515692
Biotype: lincRNA
Gene id: ENSG00000248954
Gene Name: RP11-304F15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:49898509-49898537
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-312J18.5
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000425270
Biotype: processed_pseudogene
Gene id: ENSG00000213080
Gene Name: RP11-312J18.5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:160895227-160895255
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-319G6.1
hsa-miR-375
0.441
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000514729
Biotype: antisense
Gene id: ENSG00000248932
Gene Name: RP11-319G6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:139390269-139390297
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-362F19.1
hsa-miR-375
0.827
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000511213
Biotype: lincRNA
Gene id: ENSG00000248810
Gene Name: RP11-362F19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:141332446-141332474
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-369F10.2
hsa-miR-375
0.445
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000412137
Biotype: antisense
Gene id: ENSG00000230575
Gene Name: RP11-369F10.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
10:76437434-76437462
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-386B13.4
hsa-miR-375
0.551
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000505053
Biotype: lincRNA
Gene id: ENSG00000248517
Gene Name: RP11-386B13.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
4:185004719-185004747
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-390E23.6
hsa-miR-375
0.596
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000607957
Biotype: antisense
Gene id: ENSG00000272686
Gene Name: RP11-390E23.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:123749659-123749687
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-392P7.1
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000475592
Biotype: processed_pseudogene
Gene id: ENSG00000241352
Gene Name: RP11-392P7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:12851644-12851672
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-422P24.9
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000431295
Biotype: processed_pseudogene
Gene id: ENSG00000231416
Gene Name: RP11-422P24.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:153995660-153995688
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-145M24.1
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000531489
Biotype: processed_pseudogene
Gene id: ENSG00000254708
Gene Name: RP1-145M24.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:34335609-34335637
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-463H24.1
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000477176
Biotype: processed_pseudogene
Gene id: ENSG00000244740
Gene Name: RP11-463H24.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
3:136205683-136205711
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-545I5.3
hsa-miR-375
0.658
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000592775
Biotype: antisense
Gene id: ENSG00000235652
Gene Name: RP11-545I5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:145871437-145871465
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-567G24.1
hsa-miR-375
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000451892
Biotype: processed_pseudogene
Gene id: ENSG00000228818
Gene Name: RP11-567G24.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:240144170-240144198
exon
HITS-CLIP
DIRECT
LncBasev2
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