LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
LOC646719
hsa-miR-34a-5p
0.632
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: NR_046262.1
Biotype: lincRNA
Gene id: NR_046262.1 (gene)
Gene Name: LOC646719
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:36873851-36873879
exon
HITS-CLIP
DIRECT
LncBasev2
LRRC75A-AS1
hsa-miR-34a-5p
0.547
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000497774
Biotype: retained_intron
Gene id: ENSG00000175061
Gene Name: LRRC75A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:16439591-16439619
exon
PAR-CLIP
DIRECT
LncBasev2
LY86-AS1
hsa-miR-34a-5p
0.502
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000435641
Biotype: antisense
Gene id: ENSG00000216863
Gene Name: LY86-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:6438682-6438710
exon
HITS-CLIP
DIRECT
LncBasev2
LYPLA1P3
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000402650
Biotype: processed_pseudogene
Gene id: ENSG00000218350
Gene Name: LYPLA1P3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:71165436-71165464
exon
HITS-CLIP
DIRECT
LncBasev2
MALAT1
hsa-miR-34a-5p
0.653
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HMSC
IP
Tested Cell Line: HMSC
Category: Stem/Progenitor
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65505529-65505557
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505529-65505557
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500945-65500973
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505529-65505557
exon
HITS-CLIP
DIRECT
LncBasev2
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
11:65505529-65505557
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505529-65505557
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500945-65500973
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500945-65500973
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505529-65505557
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500945-65500973
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505529-65505557
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505529-65505557
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500945-65500973
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65505529-65505557
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500945-65500973
exon
HITS-CLIP
DIRECT
LncBasev2
MGC27345
hsa-miR-34a-5p
0.628
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: NR_046216.1
Biotype: sense
Gene id: NR_046216.1 (gene)
Gene Name: MGC27345
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:128306632-128306660
exon
HITS-CLIP
DIRECT
LncBasev2
MIR222HG
hsa-miR-34a-5p
0.389
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000602507
Biotype: lincRNA
Gene id: ENSG00000270069
Gene Name: MIR222HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
X:45768846-45768874
exon
HITS-CLIP
DIRECT
LncBasev2
MIR29B1
hsa-miR-34a-5p
0.556
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000432045
Biotype: lincRNA
Gene id: ENSG00000226380
Gene Name: MIR29B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
7:130913005-130913033
exon
HITS-CLIP
DIRECT
LncBasev2
MIR4534
hsa-miR-34a-5p
0.980
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:37976241-37976269
exon
HITS-CLIP
DIRECT
LncBasev2
22:37994050-37994078
exon
HITS-CLIP
DIRECT
LncBasev2
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
22:37990415-37990443
exon
HITS-CLIP
DIRECT
LncBasev2
MIRLET7BHG
hsa-miR-34a-5p
0.532
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000360737
Biotype: lincRNA
Gene id: ENSG00000197182
Gene Name: MIRLET7BHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
22:46110027-46110055
exon
HITS-CLIP
DIRECT
LncBasev2
MSANTD2P1
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 21
Transcript: ENST00000445341
Biotype: processed_pseudogene
Gene id: ENSG00000231058
Gene Name: MSANTD2P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
21:23101676-23101704
exon
HITS-CLIP
DIRECT
LncBasev2
MSNP1
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000511640
Biotype: processed_pseudogene
Gene id: ENSG00000251593
Gene Name: MSNP1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:25910872-25910900
exon
HITS-CLIP
DIRECT
LncBasev2
NDUFB2-AS1
hsa-miR-34a-5p
0.374
mTTBlnPmP
Bi

Gene Details
Chromosome: 7
Transcript: ENST00000465466
Biotype: antisense
Gene id: ENSG00000240889
Gene Name: NDUFB2-AS1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Lal Ashish et al. 2011
Bone Marrow
K562
Bi
Tested Cell Line: K562
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
-
Biotin-Microarrays
INDIRECT
LncBasev2
NDUFS5P1
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000405668
Biotype: processed_pseudogene
Gene id: ENSG00000218424
Gene Name: NDUFS5P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:136475874-136475902
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-34a-5p
0.882
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
11:65423025-65423053
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442417-65442445
exon
HITS-CLIP
DIRECT
LncBasev2
11:65437981-65438009
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427240-65427268
exon
HITS-CLIP
DIRECT
LncBasev2
11:65435668-65435696
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443771-65443799
exon
HITS-CLIP
DIRECT
LncBasev2
11:65433855-65433883
exon
HITS-CLIP
DIRECT
LncBasev2
11:65428765-65428793
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427125-65427153
exon
HITS-CLIP
DIRECT
LncBasev2
11:65433855-65433883
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443568-65443596
exon
HITS-CLIP
DIRECT
LncBasev2
11:65437981-65438009
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423025-65423053
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427125-65427153
exon
HITS-CLIP
DIRECT
LncBasev2
11:65437731-65437759
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427240-65427268
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426550-65426578
exon
HITS-CLIP
DIRECT
LncBasev2
11:65435668-65435696
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427240-65427268
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426550-65426578
exon
HITS-CLIP
DIRECT
LncBasev2
11:65433855-65433883
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443771-65443799
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427240-65427268
exon
HITS-CLIP
DIRECT
LncBasev2
11:65428765-65428793
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443724-65443752
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443568-65443596
exon
HITS-CLIP
DIRECT
LncBasev2
11:65438931-65438959
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423025-65423053
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427125-65427153
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443939-65443967
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65438931-65438959
exon
HITS-CLIP
DIRECT
LncBasev2
11:65433125-65433153
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443568-65443596
exon
HITS-CLIP
DIRECT
LncBasev2
11:65437882-65437910
exon
HITS-CLIP
DIRECT
LncBasev2
11:65437731-65437759
exon
HITS-CLIP
DIRECT
LncBasev2
11:65428765-65428793
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426550-65426578
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65443771-65443799
exon
HITS-CLIP
DIRECT
LncBasev2
11:65437731-65437759
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427125-65427153
exon
HITS-CLIP
DIRECT
LncBasev2
11:65433125-65433153
exon
HITS-CLIP
DIRECT
LncBasev2
11:65437731-65437759
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65429254-65429282
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442417-65442445
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423025-65423053
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443771-65443799
exon
HITS-CLIP
DIRECT
LncBasev2
11:65433125-65433153
exon
HITS-CLIP
DIRECT
LncBasev2
11:65435668-65435696
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443724-65443752
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443568-65443596
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426550-65426578
exon
HITS-CLIP
DIRECT
LncBasev2
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRN.
Location
Region
Method
Result
Validation Type
Source
11:65437731-65437759
exon
HITS-CLIP
DIRECT
LncBasev2
11:65438931-65438959
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65423025-65423053
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65443939-65443967
exon
HITS-CLIP
DIRECT
LncBasev2
11:65433855-65433883
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427125-65427153
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426550-65426578
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443771-65443799
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443110-65443138
exon
HITS-CLIP
DIRECT
LncBasev2
11:65435668-65435696
exon
HITS-CLIP
DIRECT
LncBasev2
11:65433125-65433153
exon
HITS-CLIP
DIRECT
LncBasev2
11:65437882-65437910
exon
HITS-CLIP
DIRECT
LncBasev2
11:65437981-65438009
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434485-65434513
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443724-65443752
exon
HITS-CLIP
DIRECT
LncBasev2
11:65437731-65437759
exon
HITS-CLIP
DIRECT
LncBasev2
11:65428765-65428793
exon
HITS-CLIP
DIRECT
LncBasev2
11:65429254-65429282
exon
HITS-CLIP
DIRECT
LncBasev2
11:65438931-65438959
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427240-65427268
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423025-65423053
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-34a-5p
0.368
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: NR_028272.1
Biotype: lincRNA
Gene id: NR_028272.1 (gene)
Gene Name: NEAT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65423025-65423053
exon
HITS-CLIP
DIRECT
LncBasev2
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
11:65423025-65423053
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423025-65423053
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423025-65423053
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65423025-65423053
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65423025-65423053
exon
HITS-CLIP
DIRECT
LncBasev2
NHP2P1
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000335274
Biotype: processed_pseudogene
Gene id: ENSG00000105988
Gene Name: NHP2P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:92216564-92216592
exon
HITS-CLIP
DIRECT
LncBasev2
10:92216564-92216609
exon
HITS-CLIP
DIRECT
LncBasev2
NPHP3-ACAD11
hsa-miR-34a-5p
0.764
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: NR_037804.1
Biotype: sense
Gene id: NR_037804.1 (gene)
Gene Name: NPHP3-ACAD11
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:132618642-132618670
exon
HITS-CLIP
DIRECT
LncBasev2
NUDT19P5
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000505620
Biotype: processed_pseudogene
Gene id: ENSG00000251073
Gene Name: NUDT19P5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
4:158183001-158183029
exon
HITS-CLIP
DIRECT
LncBasev2
OIP5-AS1
hsa-miR-34a-5p
0.397
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000500949
Biotype: antisense
Gene id: ENSG00000247556
Gene Name: OIP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Sebastian Memczak et al. 2013
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:41306240-41306268
exon
PAR-CLIP
DIRECT
LncBasev2
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:41306240-41306268
exon
PAR-CLIP
DIRECT
LncBasev2
Skalsky Rebecca L. et al. 2012
LCL35
IP
Tested Cell Line: LCL35
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:41306240-41306268
exon
PAR-CLIP
DIRECT
LncBasev2
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