LncBase Experimental v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-56P9.10
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000530465
Biotype: unprocessed_pseudogene
Gene id: ENSG00000254728
Gene Name: RP11-56P9.10
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
11:48882222-48882250
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-57H14.4
hsa-miR-34a-5p
0.538
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000564352
Biotype: sense_overlapping
Gene id: ENSG00000260917
Gene Name: RP11-57H14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:112825268-112825296
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-588K22.2
hsa-miR-34a-5p
0.637
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000569449
Biotype: sense_overlapping
Gene id: ENSG00000260244
Gene Name: RP11-588K22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:155735658-155735686
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-589F4.2
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000532323
Biotype: unprocessed_pseudogene
Gene id: ENSG00000255424
Gene Name: RP11-589F4.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
11:19030402-19030430
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-5N11.6
hsa-miR-34a-5p
0.445
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000509629
Biotype: lincRNA
Gene id: ENSG00000250164
Gene Name: RP11-5N11.6
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
5:31747688-31747716
exon
HITS-CLIP
DIRECT
LncBasev2
5:31747688-31747716
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-61I13.3
hsa-miR-34a-5p
0.754
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000607675
Biotype: antisense
Gene id: ENSG00000235033
Gene Name: RP11-61I13.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kishore S et al. 2011
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:39887918-39887946
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-661D19.1
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000475260
Biotype: processed_pseudogene
Gene id: ENSG00000230988
Gene Name: RP11-661D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
14:102662451-102662479
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-67L2.2
hsa-miR-34a-5p
0.573
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000610128
Biotype: lincRNA
Gene id: ENSG00000273033
Gene Name: RP11-67L2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:122891436-122891464
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-693J15.4
hsa-miR-34a-5p
0.855
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000508671
Biotype: antisense
Gene id: ENSG00000266923
Gene Name: RP11-693J15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:92482060-92482088
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-693J15.5
hsa-miR-34a-5p
0.935
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000504409
Biotype: lincRNA
Gene id: ENSG00000205056
Gene Name: RP11-693J15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:92482060-92482088
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-715J22.2
hsa-miR-34a-5p
0.350
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000563775
Biotype: antisense
Gene id: ENSG00000259895
Gene Name: RP11-715J22.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
16:2467173-2467201
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-731J8.2
hsa-miR-34a-5p
0.708
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000562284
Biotype: sense_overlapping
Gene id: ENSG00000260918
Gene Name: RP11-731J8.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:47436525-47436553
exon
HITS-CLIP
DIRECT
LncBasev2
4:47433685-47433713
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-760H22.2
hsa-miR-34a-5p
0.406
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000520544
Biotype: lincRNA
Gene id: ENSG00000254343
Gene Name: RP11-760H22.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:120052318-120052346
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-844P9.2
hsa-miR-34a-5p
0.419
mTTBlnPmP
Bi

Gene Details
Chromosome: 5
Transcript: ENST00000515403
Biotype: lincRNA
Gene id: ENSG00000248596
Gene Name: RP11-844P9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Lal Ashish et al. 2011
Bone Marrow
K562
Bi
Tested Cell Line: K562
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
-
Biotin-Microarrays
INDIRECT
LncBasev2
RP11-864N7.2
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000428553
Biotype: processed_pseudogene
Gene id: ENSG00000227615
Gene Name: RP11-864N7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:74745997-74746025
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-86K22.1
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000558410
Biotype: processed_pseudogene
Gene id: ENSG00000259477
Gene Name: RP11-86K22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
15:57979822-57979850
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-94L15.2
hsa-miR-34a-5p
0.423
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000488188
Biotype: lincRNA
Gene id: ENSG00000264198
Gene Name: RP11-94L15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:39762299-39762327
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-959F10.5
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000472881
Biotype: processed_pseudogene
Gene id: ENSG00000253547
Gene Name: RP11-959F10.5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:63046833-63046861
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-97O12.7
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000561140
Biotype: processed_transcript
Gene id: ENSG00000173867
Gene Name: RP11-97O12.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:88459739-88459767
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-981G7.1
hsa-miR-34a-5p
0.547
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000562242
Biotype: sense_overlapping
Gene id: ENSG00000261451
Gene Name: RP11-981G7.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:10435011-10435039
exon
HITS-CLIP
DIRECT
LncBasev2
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