LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-337C18.8
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000440377
Biotype: antisense
Gene id: ENSG00000237188
Gene Name: RP11-337C18.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:147174866-147174894
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-337L12.1
hsa-miR-34a-5p
0.392
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000539362
Biotype: lincRNA
Gene id: ENSG00000256085
Gene Name: RP11-337L12.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:129521789-129521817
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-347H15.2
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000525487
Biotype: processed_pseudogene
Gene id: ENSG00000255500
Gene Name: RP11-347H15.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:50268557-50268585
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-361F15.2
hsa-miR-34a-5p
0.445
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000443556
Biotype: lincRNA
Gene id: ENSG00000225135
Gene Name: RP11-361F15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Skalsky Rebecca L. et al. 2012
LCLBACD3
IP
Tested Cell Line: LCLBACD3
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:147389212-147389240
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-363E7.4
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000563205
Biotype: sense_overlapping
Gene id: ENSG00000260912
Gene Name: RP11-363E7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:19455091-19455119
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-372K14.2
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000603472
Biotype: antisense
Gene id: ENSG00000270681
Gene Name: RP11-372K14.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Sebastian Memczak et al. 2013
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:151140663-151140691
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-380L11.4
hsa-miR-34a-5p
0.643
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000602952
Biotype: antisense
Gene id: ENSG00000270028
Gene Name: RP11-380L11.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Skalsky Rebecca L. et al. 2012
EF3DAGO2
IP
Tested Cell Line: EF3DAGO2
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:123925746-123925774
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-383J24.6
hsa-miR-34a-5p
0.578
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000607837
Biotype: lincRNA
Gene id: ENSG00000271975
Gene Name: RP11-383J24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:124308071-124308099
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-384C4.3
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000416139
Biotype: processed_pseudogene
Gene id: ENSG00000225338
Gene Name: RP11-384C4.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:212309260-212309288
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-390P24.1
hsa-miR-34a-5p
0.870
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000615852
Biotype: lincRNA
Gene id: ENSG00000273576
Gene Name: RP11-390P24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:39567202-39567230
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-3B7.1
hsa-miR-34a-5p
0.396
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000622888
Biotype: lincRNA
Gene id: ENSG00000225399
Gene Name: RP11-3B7.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:49261316-49261344
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-401N18.1
hsa-miR-34a-5p
0.435
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000603280
Biotype: lincRNA
Gene id: ENSG00000271148
Gene Name: RP11-401N18.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:49907165-49907193
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-432J9.6
hsa-miR-34a-5p
0.384
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000560700
Biotype: lincRNA
Gene id: ENSG00000259267
Gene Name: RP11-432J9.6
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
10:70939147-70939175
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-453D16.2
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000553021
Biotype: processed_pseudogene
Gene id: ENSG00000257872
Gene Name: RP11-453D16.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:76137523-76137551
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-458F8.4
hsa-miR-34a-5p
0.476
mTTBlnPmP
Bi

Gene Details
Chromosome: 7
Transcript: ENST00000610177
Biotype: lincRNA
Gene id: ENSG00000273142
Gene Name: RP11-458F8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Lal Ashish et al. 2011
Bone Marrow
K562
Bi
Tested Cell Line: K562
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
-
Biotin-Microarrays
INDIRECT
LncBasev2
RP11-482H16.1
hsa-miR-34a-5p
0.840
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000607540
Biotype: processed_transcript
Gene id: ENSG00000271894
Gene Name: RP11-482H16.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:56384364-56384392
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-483C6.1
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000572358
Biotype: sense_intronic
Gene id: ENSG00000262119
Gene Name: RP11-483C6.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:26593915-26593943
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-553L6.5
hsa-miR-34a-5p
0.433
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000570269
Biotype: lincRNA
Gene id: ENSG00000259976
Gene Name: RP11-553L6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:114314955-114314983
exon
PAR-CLIP
DIRECT
LncBasev2
Skalsky Rebecca L. et al. 2012
LCLBAC
IP
Tested Cell Line: LCLBAC
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:114314955-114314983
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-556K13.1
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000431241
Biotype: processed_pseudogene
Gene id: ENSG00000183298
Gene Name: RP11-556K13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:101786944-101786972
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-567M16.3
hsa-miR-34a-5p
-
mTTBlnPmP
Bi

Gene Details
Chromosome: 18
Transcript: ENST00000317008
Biotype: lincRNA
Gene id: ENSG00000178412
Gene Name: RP11-567M16.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Lal Ashish et al. 2011
Bone Marrow
K562
Bi
Tested Cell Line: K562
Category: Cancer/Malignant
Experimental Condition: Biotinylated miR-522 mimic transfection
Location
Region
Method
Result
Validation Type
Source
-
Biotin-Microarrays
INDIRECT
LncBasev2
Funded by:
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