LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RFPL1S
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: NR_002727.2
Biotype: antisense
Gene id: NR_002727.2 (gene)
Gene Name: RFPL1S
UCSC graphic: -
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:29437908-29437936
exon
HITS-CLIP
DIRECT
LncBasev2
RHPN1-AS1
hsa-miR-34a-5p
0.465
mTTBlnPmP
Bi

Gene Details
Chromosome: 8
Transcript: ENST00000518049
Biotype: antisense
Gene id: ENSG00000254389
Gene Name: RHPN1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Lal Ashish et al. 2011
Intestine
HCT116
Bi
Tested Cell Line: HCT116
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
-
Biotin-Microarrays
INDIRECT
LncBasev2
RNASEK-C17orf49
hsa-miR-34a-5p
0.476
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: NR_037717.1
Biotype: sense
Gene id: NR_037717.1 (gene)
Gene Name: RNASEK-C17orf49
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Hafner M. et al. 2010
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:7014218-7014246
exon
PAR-CLIP
DIRECT
LncBasev2
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRN.
Location
Region
Method
Result
Validation Type
Source
17:7014218-7014246
exon
HITS-CLIP
DIRECT
LncBasev2
RNU12
hsa-miR-34a-5p
0.373
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000602478
Biotype: lincRNA
Gene id: ENSG00000270022
Gene Name: RNU12
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:42615278-42615306
exon
HITS-CLIP
DIRECT
LncBasev2
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRN.
Location
Region
Method
Result
Validation Type
Source
22:42615278-42615306
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:42615278-42615306
exon
HITS-CLIP
DIRECT
LncBasev2
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
22:42615278-42615306
exon
HITS-CLIP
DIRECT
LncBasev2
RNY4P13
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000590718
Biotype: unprocessed_pseudogene
Gene id: ENSG00000267482
Gene Name: RNY4P13
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:30059069-30059097
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-1026M7.2
hsa-miR-34a-5p
0.507
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000502515
Biotype: antisense
Gene id: ENSG00000249109
Gene Name: RP11-1026M7.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:177793511-177793539
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-112J1.3
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000555790
Biotype: processed_pseudogene
Gene id: ENSG00000258734
Gene Name: RP11-112J1.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:58828071-58828099
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-1299A16.3
hsa-miR-34a-5p
0.479
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000569927
Biotype: antisense
Gene id: ENSG00000260641
Gene Name: RP11-1299A16.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:98660680-98660708
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-146F11.5
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000563540
Biotype: antisense
Gene id: ENSG00000260167
Gene Name: RP11-146F11.5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
16:30608312-30608340
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-159J3.1
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000513369
Biotype: processed_pseudogene
Gene id: ENSG00000250982
Gene Name: RP11-159J3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:28240146-28240174
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-15H20.6
hsa-miR-34a-5p
0.847
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: ENST00000593324
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
19:23269685-23269713
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-211A18.1
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000420014
Biotype: processed_pseudogene
Gene id: ENSG00000236636
Gene Name: RP11-211A18.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:227264974-227265002
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-212P7.1
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000393266
Biotype: processed_pseudogene
Gene id: ENSG00000213280
Gene Name: RP11-212P7.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:128570411-128570439
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-283I3.6
hsa-miR-34a-5p
0.559
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000570140
Biotype: sense_overlapping
Gene id: ENSG00000261799
Gene Name: RP11-283I3.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
12:274438-274466
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-285G1.14
hsa-miR-34a-5p
0.432
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000609898
Biotype: sense_intronic
Gene id: ENSG00000273363
Gene Name: RP11-285G1.14
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
10:44959134-44959162
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-297M9.2
hsa-miR-34a-5p
0.735
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000562861
Biotype: lincRNA
Gene id: ENSG00000260432
Gene Name: RP11-297M9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:9755681-9755709
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-312J18.5
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000425270
Biotype: processed_pseudogene
Gene id: ENSG00000213080
Gene Name: RP11-312J18.5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:160895524-160895552
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-317N8.4
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000550416
Biotype: processed_pseudogene
Gene id: ENSG00000257307
Gene Name: RP11-317N8.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:35881044-35881072
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-32B5.1
hsa-miR-34a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000556425
Biotype: processed_pseudogene
Gene id: ENSG00000237161
Gene Name: RP11-32B5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:21294426-21294454
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-334C17.5
hsa-miR-34a-5p
0.688
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000573346
Biotype: antisense
Gene id: ENSG00000262580
Gene Name: RP11-334C17.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
17:80205436-80205464
exon
HITS-CLIP
DIRECT
LncBasev2
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