LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-324-3p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-196G18.22
hsa-miR-324-3p
0.552
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000564237
Biotype: sense_overlapping
Gene id: ENSG00000261716
Gene Name: RP11-196G18.22
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
1:149846173-149846201
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-2B6.2
hsa-miR-324-3p
0.382
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000602652
Biotype: lincRNA
Gene id: ENSG00000269929
Gene Name: RP11-2B6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
9:94177218-94177246
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-319G6.1
hsa-miR-324-3p
0.397
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000514729
Biotype: antisense
Gene id: ENSG00000248932
Gene Name: RP11-319G6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:139390290-139390318
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-352G18.2
hsa-miR-324-3p
0.854
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000565993
Biotype: antisense
Gene id: ENSG00000260773
Gene Name: RP11-352G18.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
15:66315020-66315048
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-372E1.1
hsa-miR-324-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000489462
Biotype: processed_pseudogene
Gene id: ENSG00000240950
Gene Name: RP11-372E1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS27a
IP
Tested Cell Line: HS27a
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:142827569-142827597
exon
HITS-CLIP
DIRECT
LncBasev2
3:142827569-142827597
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:142827569-142827597
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:142827569-142827597
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-379H18.1
hsa-miR-324-3p
0.423
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000605778
Biotype: antisense
Gene id: ENSG00000271122
Gene Name: RP11-379H18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:35695734-35695762
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:35695734-35695762
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-390P24.1
hsa-miR-324-3p
0.479
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000615852
Biotype: lincRNA
Gene id: ENSG00000273576
Gene Name: RP11-390P24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary

miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:39567164-39567192
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-401P9.1
hsa-miR-324-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000569940
Biotype: antisense
Gene id: ENSG00000260029
Gene Name: RP11-401P9.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
16:50551883-50551911
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-438L7.3
hsa-miR-324-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000540341
Biotype: processed_pseudogene
Gene id: ENSG00000255967
Gene Name: RP11-438L7.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:8634490-8634518
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-44N21.4
hsa-miR-324-3p
0.428
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000548203
Biotype: processed_transcript
Gene id: ENSG00000257622
Gene Name: RP11-44N21.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant

miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
14:105152203-105152250
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-457K10.2
hsa-miR-324-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000488231
Biotype: processed_pseudogene
Gene id: ENSG00000214380
Gene Name: RP11-457K10.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:hippuristanol
Location
Region
Method
Result
Validation Type
Source
3:109916130-109916158
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-51L5.2
hsa-miR-324-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000495438
Biotype: processed_pseudogene
Gene id: ENSG00000239809
Gene Name: RP11-51L5.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:62381852-62381880
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-531A24.3
hsa-miR-324-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000564832
Biotype: lincRNA
Gene id: ENSG00000260838
Gene Name: RP11-531A24.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:72948539-72948567
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-54O7.1
hsa-miR-324-3p
0.565
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000448179
Biotype: lincRNA
Gene id: ENSG00000230699
Gene Name: RP11-54O7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary

miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:913714-913742
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-57C19.2
hsa-miR-324-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000423330
Biotype: processed_pseudogene
Gene id: ENSG00000232172
Gene Name: RP11-57C19.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
9:130651997-130652025
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-69M1.3
hsa-miR-324-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000429127
Biotype: processed_pseudogene
Gene id: ENSG00000255964
Gene Name: RP11-69M1.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:8015205-8015233
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-717D12.1
hsa-miR-324-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000398957
Biotype: sense_intronic
Gene id: ENSG00000214773
Gene Name: RP11-717D12.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:47604412-47604440
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-71H17.9
hsa-miR-324-3p
0.477
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000608154
Biotype: lincRNA
Gene id: ENSG00000272947
Gene Name: RP11-71H17.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
3:124748618-124748646
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-727A23.5
hsa-miR-324-3p
0.746
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000624533
Biotype: TEC
Gene id: ENSG00000247137
Gene Name: RP11-727A23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:83192292-83192320
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-172N19.4
hsa-miR-324-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000395709
Biotype: processed_pseudogene
Gene id: ENSG00000213698
Gene Name: RP1-172N19.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Publication
Tissue
Cell Type
Methods
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRNA.
Location
Region
Method
Result
Validation Type
Source
X:72728675-72728703
exon
HITS-CLIP
DIRECT
LncBasev2
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