LncBase Experimental v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-2C24.4
hsa-miR-28-5p
0.500
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000483578
Biotype: processed_transcript
Gene id: ENSG00000260899
Gene Name: RP11-2C24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary

miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
16:30748447-30748475
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-307L3.2
hsa-miR-28-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000456723
Biotype: processed_pseudogene
Gene id: ENSG00000233846
Gene Name: RP11-307L3.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:6278888-6278916
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-332E4.1
hsa-miR-28-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000442158
Biotype: processed_pseudogene
Gene id: ENSG00000214748
Gene Name: RP11-332E4.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:137324973-137325001
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-33A14.1
hsa-miR-28-5p
0.592
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000411727
Biotype: lincRNA
Gene id: ENSG00000223930
Gene Name: RP11-33A14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant

miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:178334746-178334774
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-33B1.1
hsa-miR-28-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000510011
Biotype: processed_transcript
Gene id: ENSG00000245958
Gene Name: RP11-33B1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:119461813-119461841
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-343H19.2
hsa-miR-28-5p
0.656
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000567563
Biotype: processed_transcript
Gene id: ENSG00000259827
Gene Name: RP11-343H19.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:56682504-56682560
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-347I19.7
hsa-miR-28-5p
0.695
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000613093
Biotype: lincRNA
Gene id: ENSG00000274292
Gene Name: RP11-347I19.7
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
12:121803096-121803124
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-386I14.3
hsa-miR-28-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000448345
Biotype: processed_pseudogene
Gene id: ENSG00000213560
Gene Name: RP11-386I14.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
1:78091521-78091549
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-480A16.1
hsa-miR-28-5p
0.613
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000570130
Biotype: lincRNA
Gene id: ENSG00000260261
Gene Name: RP11-480A16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
3:195952520-195952548
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-518L10.5
hsa-miR-28-5p
0.425
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000417765
Biotype: antisense
Gene id: ENSG00000240963
Gene Name: RP11-518L10.5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
1:244409556-244409584
exon
HITS-CLIP
DIRECT
LncBasev2
1:244409556-244409584
exon
HITS-CLIP
DIRECT
LncBasev2
1:244409556-244409584
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-51G5.1
hsa-miR-28-5p
0.666
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000444796
Biotype: lincRNA
Gene id: ENSG00000230852
Gene Name: RP11-51G5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary

miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:84023062-84023090
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-53O19.1
hsa-miR-28-5p
0.606
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000503452
Biotype: antisense
Gene id: ENSG00000251141
Gene Name: RP11-53O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:44745094-44745122
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-54O7.1
hsa-miR-28-5p
0.549
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000448179
Biotype: lincRNA
Gene id: ENSG00000230699
Gene Name: RP11-54O7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary

miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
1:912114-912142
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-54O7.17
hsa-miR-28-5p
0.367
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000606034
Biotype: lincRNA
Gene id: ENSG00000272512
Gene Name: RP11-54O7.17
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
1:997682-997710
exon
HITS-CLIP
DIRECT
LncBasev2
1:997682-997710
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-553P9.1
hsa-miR-28-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000509116
Biotype: processed_pseudogene
Gene id: ENSG00000250144
Gene Name: RP11-553P9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:135046680-135046708
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-562A8.1
hsa-miR-28-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000495139
Biotype: processed_pseudogene
Gene id: ENSG00000242737
Gene Name: RP11-562A8.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:50466919-50466947
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-690I21.2
hsa-miR-28-5p
0.389
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000563949
Biotype: sense_overlapping
Gene id: ENSG00000261096
Gene Name: RP11-690I21.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
2:231810599-231810627
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-705C15.2
hsa-miR-28-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000575094
Biotype: processed_transcript
Gene id: ENSG00000256594
Gene Name: RP11-705C15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
12:9657869-9657897
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-715J22.6
hsa-miR-28-5p
0.412
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000561847
Biotype: sense_intronic
Gene id: ENSG00000260293
Gene Name: RP11-715J22.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant

miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
16:2481423-2481451
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-725P16.2
hsa-miR-28-5p
0.878
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000608279
Biotype: lincRNA
Gene id: ENSG00000272769
Gene Name: RP11-725P16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:132347219-132347247
exon
HITS-CLIP
DIRECT
LncBasev2
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