LncBase Experimental v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-221-3p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP3-368A4.6
hsa-miR-221-3p
0.449
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000604070
Biotype: sense_intronic
Gene id: ENSG00000271533
Gene Name: RP3-368A4.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:74211503-74211531
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-671O14.6
hsa-miR-221-3p
0.461
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000624919
Biotype: sense_overlapping
Gene id: ENSG00000280434
Gene Name: RP4-671O14.6
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:hippuristanol
Location
Region
Method
Result
Validation Type
Source
22:44150677-44150705
exon
HITS-CLIP
DIRECT
LncBasev2
22:44150677-44150705
exon
HITS-CLIP
DIRECT
LncBasev2
22:44150677-44150705
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:44150677-44150705
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-813F11.4
hsa-miR-221-3p
0.404
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000610021
Biotype: lincRNA
Gene id: ENSG00000273081
Gene Name: RP4-813F11.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:141003755-141003783
exon
HITS-CLIP
DIRECT
LncBasev2
RP5-984P4.6
hsa-miR-221-3p
0.793
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000622757
Biotype: lincRNA
Gene id: ENSG00000278041
Gene Name: RP5-984P4.6
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:21499550-21499578
exon
HITS-CLIP
DIRECT
LncBasev2
RPL5P17
hsa-miR-221-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000469685
Biotype: processed_pseudogene
Gene id: ENSG00000243859
Gene Name: RPL5P17
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:85465235-85465263
exon
HITS-CLIP
DIRECT
LncBasev2
SATB1-AS1
hsa-miR-221-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000593741
Biotype: antisense
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:18530277-18530305
exon
HITS-CLIP
DIRECT
LncBasev2
SEPT7P9
hsa-miR-221-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000572124
Biotype: retained_intron
Gene id: ENSG00000185495
Gene Name: SEPT7P9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:224002872-224002900
exon
HITS-CLIP
DIRECT
LncBasev2
SLC26A4-AS1
hsa-miR-221-3p
0.384
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000440512
Biotype: antisense
Gene id: ENSG00000233705
Gene Name: SLC26A4-AS1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:107658864-107658892
exon
HITS-CLIP
DIRECT
LncBasev2
SLC2A3P1
hsa-miR-221-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000519666
Biotype: processed_pseudogene
Gene id: ENSG00000253861
Gene Name: SLC2A3P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:168553119-168553147
exon
HITS-CLIP
DIRECT
LncBasev2
SNHG14
hsa-miR-221-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000551631
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:25022631-25022659
exon
HITS-CLIP
DIRECT
LncBasev2
STAG3L4
hsa-miR-221-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000416602
Biotype: processed_transcript
Gene id: ENSG00000106610
Gene Name: STAG3L4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:67321307-67321335
exon
HITS-CLIP
DIRECT
LncBasev2
SUZ12P1
hsa-miR-221-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000582329
Biotype: processed_transcript
Gene id: ENSG00000264538
Gene Name: SUZ12P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:30787581-30787609
exon
HITS-CLIP
DIRECT
LncBasev2
TEKT4P2
hsa-miR-221-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 21
Transcript: ENST00000416067
Biotype: processed_transcript
Gene id: ENSG00000188681
Gene Name: TEKT4P2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
21:9129718-9129746
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HMSC
IP
Tested Cell Line: HMSC
Category: Stem/Progenitor
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
21:9129718-9129746
exon
HITS-CLIP
DIRECT
LncBasev2
TMX2-CTNND1
hsa-miR-221-3p
0.398
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: NR_037646.1
Biotype: sense
Gene id: NR_037646.1 (gene)
Gene Name: TMX2-CTNND1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:57801909-57801937
exon
HITS-CLIP
DIRECT
LncBasev2
TUG1
hsa-miR-221-3p
0.531
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000519077
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
22:30977384-30977412
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS27a
IP
Tested Cell Line: HS27a
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:30977384-30977412
exon
HITS-CLIP
DIRECT
LncBasev2
22:30977384-30977412
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:30977384-30977412
exon
HITS-CLIP
DIRECT
LncBasev2
TYMSOS
hsa-miR-221-3p
0.640
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000323813
Biotype: antisense
Gene id: ENSG00000176912
Gene Name: TYMSOS
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
18:649752-649780
exon
HITS-CLIP
DIRECT
LncBasev2
U91328.22
hsa-miR-221-3p
0.676
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000608919
Biotype: lincRNA
Gene id: ENSG00000272810
Gene Name: U91328.22
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:26013691-26013719
exon
HITS-CLIP
DIRECT
LncBasev2
UG0898H09
hsa-miR-221-3p
0.356
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000623646
Biotype: lincRNA
Gene id: ENSG00000274956
Gene Name: UG0898H09
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:62982353-62982381
exon
HITS-CLIP
DIRECT
LncBasev2
VN1R85P
hsa-miR-221-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: ENST00000601587
Biotype: unprocessed_pseudogene
Gene id: ENSG00000269345
Gene Name: VN1R85P
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
19:22175156-22175184
exon
HITS-CLIP
DIRECT
LncBasev2
WDFY3-AS2
hsa-miR-221-3p
0.817
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000451762
Biotype: antisense
Gene id: ENSG00000180769
Gene Name: WDFY3-AS2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:85008399-85008427
exon
HITS-CLIP
DIRECT
LncBasev2
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