LncBase Experimental v.2
Help
Download
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-221-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-111M22.4
hsa-miR-221-3p
0.631
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000606980
Biotype: lincRNA
Gene id: ENSG00000272301
Gene Name: RP11-111M22.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:76390017-76390045
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-119F7.5
hsa-miR-221-3p
0.825
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000562082
Biotype: sense_overlapping
Gene id: ENSG00000260400
Gene Name: RP11-119F7.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:68700498-68700526
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-13N13.2
hsa-miR-221-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000577906
Biotype: lincRNA
Gene id: ENSG00000263350
Gene Name: RP11-13N13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
18:21630148-21630176
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-147L13.8
hsa-miR-221-3p
0.967
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000591222
Biotype: lincRNA
Gene id: ENSG00000267731
Gene Name: RP11-147L13.8
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:68192742-68192770
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-156E6.1
hsa-miR-221-3p
0.539
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000560400
Biotype: sense_overlapping
Gene id: ENSG00000259623
Gene Name: RP11-156E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Hafner M. et al. 2010
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:41848641-41848669
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-173G21.1
hsa-miR-221-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000445995
Biotype: processed_pseudogene
Gene id: ENSG00000230221
Gene Name: RP11-173G21.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:95292811-95292839
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-192H23.8
hsa-miR-221-3p
0.613
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000582858
Biotype: sense_intronic
Gene id: ENSG00000264608
Gene Name: RP11-192H23.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:28601930-28601958
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-216B9.6
hsa-miR-221-3p
0.369
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000426704
Biotype: antisense
Gene id: ENSG00000228395
Gene Name: RP11-216B9.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
9:128543572-128543600
exon
HITS-CLIP
DIRECT
LncBasev2
9:128543572-128543600
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-216N14.5
hsa-miR-221-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000427283
Biotype: unprocessed_pseudogene
Gene id: ENSG00000231827
Gene Name: RP11-216N14.5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:153796495-153796523
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-282O18.3
hsa-miR-221-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000541002
Biotype: antisense
Gene id: ENSG00000235423
Gene Name: RP11-282O18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:123261264-123261308
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
MDAMB231
IP
Tested Cell Line: MDAMB231
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:123261264-123261308
exon
HITS-CLIP
DIRECT
LncBasev2
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRN.
Location
Region
Method
Result
Validation Type
Source
12:123261264-123261308
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HMSC
IP
Tested Cell Line: HMSC
Category: Stem/Progenitor
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:123261264-123261308
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-283C24.1
hsa-miR-221-3p
0.560
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000578585
Biotype: lincRNA
Gene id: ENSG00000264215
Gene Name: RP11-283C24.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:20788983-20789011
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-286B14.1
hsa-miR-221-3p
0.745
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000411798
Biotype: lincRNA
Gene id: ENSG00000228971
Gene Name: RP11-286B14.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:95514970-95514998
exon
HITS-CLIP
DIRECT
LncBasev2
1:95515208-95515236
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-305O4.3
hsa-miR-221-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000608883
Biotype: antisense
Gene id: ENSG00000273455
Gene Name: RP11-305O4.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:136087871-136087899
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-30K9.6
hsa-miR-221-3p
0.564
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000500929
Biotype: lincRNA
Gene id: ENSG00000245975
Gene Name: RP11-30K9.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:58768874-58768902
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-314C16.1
hsa-miR-221-3p
0.553
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: NR_038979.1
Biotype: lincRNA
Gene id: NR_038979.1 (gene)
Gene Name: RP11-314C16.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:8436074-8436102
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-378A13.1
hsa-miR-221-3p
0.544
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000562328
Biotype: sense_overlapping
Gene id: ENSG00000261338
Gene Name: RP11-378A13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:218255512-218255540
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-420A23.1
hsa-miR-221-3p
0.405
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000511497
Biotype: lincRNA
Gene id: ENSG00000251432
Gene Name: RP11-420A23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Hafner M. et al. 2010
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:128519293-128519321
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-482H16.1
hsa-miR-221-3p
0.385
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000607540
Biotype: processed_transcript
Gene id: ENSG00000271894
Gene Name: RP11-482H16.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:56384556-56384584
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-486M23.1
hsa-miR-221-3p
0.387
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000521101
Biotype: lincRNA
Gene id: ENSG00000253632
Gene Name: RP11-486M23.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
8:29530046-29530074
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-498C9.15
hsa-miR-221-3p
0.656
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000582866
Biotype: lincRNA
Gene id: ENSG00000263731
Gene Name: RP11-498C9.15
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:81878760-81878788
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept