LncBase Experimental v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-21-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
XLOC_011428
hsa-miR-21-5p
0.902
mTTBlnPmP
IP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023628
Biotype: transcript isomorph
Gene id: XLOC_011428
Gene Name: XLOC_011428
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr15:37364241-37364269
exon
PAR-CLIP
DIRECT
LncBasev2
YWHAEP5
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000431545
Biotype: processed_pseudogene
Gene id: ENSG00000234645
Gene Name: YWHAEP5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:138288557-138288585
exon
HITS-CLIP
DIRECT
LncBasev2
ZBED3-AS1
hsa-miR-21-5p
0.725
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000514114
Biotype: antisense
Gene id: ENSG00000250802
Gene Name: ZBED3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:77151362-77151390
exon
HITS-CLIP
DIRECT
LncBasev2
ZNF259P1
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000572422
Biotype: processed_transcript
Gene id: ENSG00000219565
Gene Name: ZNF259P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:108786239-108786267
exon
HITS-CLIP
DIRECT
LncBasev2
ZNF92P3
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: ENST00000596594
Biotype: unprocessed_pseudogene
Gene id: ENSG00000269421
Gene Name: ZNF92P3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
19:23935410-23935438
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by:
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