LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-21-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-278C7.1
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000550917
Biotype: processed_pseudogene
Gene id: ENSG00000257511
Gene Name: RP11-278C7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:32726598-32726626
exon
HITS-CLIP
DIRECT
LncBasev2
12:32726598-32726626
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:32726598-32726626
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-282O18.3
hsa-miR-21-5p
0.807
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000541002
Biotype: antisense
Gene id: ENSG00000235423
Gene Name: RP11-282O18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:123261366-123261394
exon
HITS-CLIP
DIRECT
LncBasev2
12:123261366-123261394
exon
HITS-CLIP
DIRECT
LncBasev2
Farazi Thalia A et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:123261366-123261394
exon
HITS-CLIP
DIRECT
LncBasev2
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:123261366-123261394
exon
PAR-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:123261366-123261394
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-30P6.1
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000402742
Biotype: unprocessed_pseudogene
Gene id: ENSG00000217060
Gene Name: RP11-30P6.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:85286346-85286374
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-312A15.3
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000513850
Biotype: unprocessed_pseudogene
Gene id: ENSG00000250475
Gene Name: RP11-312A15.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:157968511-157968539
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-325P15.1
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000435000
Biotype: processed_pseudogene
Gene id: ENSG00000225603
Gene Name: RP11-325P15.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Inna Lipchina et al. 2011
Embryo
ESC
IP
Tested Cell Line: ESC
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:147051025-147051053
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-345K20.2
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000440913
Biotype: processed_pseudogene
Gene id: ENSG00000229659
Gene Name: RP11-345K20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:73422426-73422454
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-367G18.2
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000402798
Biotype: processed_pseudogene
Gene id: ENSG00000218208
Gene Name: RP11-367G18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:113581769-113581797
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-377K22.3
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000421838
Biotype: processed_pseudogene
Gene id: ENSG00000224980
Gene Name: RP11-377K22.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:56585608-56585636
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-379H18.1
hsa-miR-21-5p
0.510
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000605778
Biotype: antisense
Gene id: ENSG00000271122
Gene Name: RP11-379H18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:35695712-35695740
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-452F19.3
hsa-miR-21-5p
0.552
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000435378
Biotype: lincRNA
Gene id: ENSG00000228106
Gene Name: RP11-452F19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Skalsky Rebecca L. et al. 2012
LCLBACD1
IP
Tested Cell Line: LCLBACD1
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:222827448-222827476
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-488I20.9
hsa-miR-21-5p
0.470
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000562945
Biotype: lincRNA
Gene id: ENSG00000260073
Gene Name: RP11-488I20.9
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:35194496-35194524
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-49C9.2
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000332359
Biotype: processed_pseudogene
Gene id: ENSG00000183171
Gene Name: RP11-49C9.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:150114661-150114689
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-51O6.1
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000591758
Biotype: processed_transcript
Gene id: ENSG00000224631
Gene Name: RP11-51O6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:61055616-61055644
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-572M11.3
hsa-miR-21-5p
0.401
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000490139
Biotype: lincRNA
Gene id: ENSG00000243795
Gene Name: RP11-572M11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
3:113143595-113143623
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-582J16.5
hsa-miR-21-5p
0.405
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000521025
Biotype: antisense
Gene id: ENSG00000253200
Gene Name: RP11-582J16.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
8:22613954-22613982
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-588K22.2
hsa-miR-21-5p
0.512
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000569449
Biotype: sense_overlapping
Gene id: ENSG00000260244
Gene Name: RP11-588K22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:155735187-155735215
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-611O2.3
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000537570
Biotype: processed_pseudogene
Gene id: ENSG00000256664
Gene Name: RP11-611O2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
12:68842196-68842224
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-792A8.1
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000442005
Biotype: processed_pseudogene
Gene id: ENSG00000236928
Gene Name: RP11-792A8.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
7:66434925-66434953
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-614O4.11
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000444717
Biotype: antisense
Gene id: ENSG00000261582
Gene Name: RP4-614O4.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS27a
IP
Tested Cell Line: HS27a
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:35280036-35280064
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:35280036-35280064
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-785G19.5
hsa-miR-21-5p
0.407
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000512005
Biotype: sense_overlapping
Gene id: ENSG00000250917
Gene Name: RP4-785G19.5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
20:34281106-34281134
exon
HITS-CLIP
DIRECT
LncBasev2
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