LncBase Experimental v.2
Help
Download
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-21-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
FARSBP1
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000435808
Biotype: processed_pseudogene
Gene id: ENSG00000231060
Gene Name: FARSBP1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:80776758-80776786
exon
PAR-CLIP
DIRECT
LncBasev2
Inna Lipchina et al. 2011
Embryo
ESC
IP
Tested Cell Line: ESC
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:80776758-80776786
exon
PAR-CLIP
DIRECT
LncBasev2
Skalsky Rebecca L. et al. 2012
LCL35
IP
Tested Cell Line: LCL35
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:80776758-80776786
exon
PAR-CLIP
DIRECT
LncBasev2
GAS5
hsa-miR-21-5p
0.382
mTTBlnPmP
qP O

Gene Details
Chromosome: 1
Transcript: ENST00000450589
Biotype: lincRNA
Gene id: ENSG00000234741
Gene Name: GAS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Zhang et al. 2013
Mammary Gland
MDAMB231
qP O
Tested Cell Line: MDAMB231
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
-
exon
qPCR
INDIRECT
LncBasev2
-
exon
Other
INDIRECT
LncBasev2
-
exon
Other
INDIRECT
LncBasev2
-
exon
qPCR
INDIRECT
LncBasev2
GJA9-MYCBP
hsa-miR-21-5p
0.612
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: NR_037633.1
Biotype: sense
Gene id: NR_037633.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:38866912-38866940
exon
HITS-CLIP
DIRECT
LncBasev2
HNRNPA1P13
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000510646
Biotype: processed_pseudogene
Gene id: ENSG00000213568
Gene Name: HNRNPA1P13
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
5:136429645-136429673
exon
HITS-CLIP
DIRECT
LncBasev2
5:136429645-136429673
exon
HITS-CLIP
DIRECT
LncBasev2
HNRNPA1P42
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000458678
Biotype: processed_pseudogene
Gene id: ENSG00000233615
Gene Name: HNRNPA1P42
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
1:240920400-240920428
exon
HITS-CLIP
DIRECT
LncBasev2
HNRNPA1P69
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000552536
Biotype: processed_pseudogene
Gene id: ENSG00000257332
Gene Name: HNRNPA1P69
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
12:63272124-63272152
exon
HITS-CLIP
DIRECT
LncBasev2
HNRNPUL2-BSCL2
hsa-miR-21-5p
0.388
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: NR_037946.1
Biotype: sense
Gene id: NR_037946.1 (gene)
Gene Name: HNRNPUL2-BSCL2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS27a
IP
Tested Cell Line: HS27a
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:62721340-62721368
exon
HITS-CLIP
DIRECT
LncBasev2
11:62721340-62721368
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:62720156-62720184
exon
HITS-CLIP
DIRECT
LncBasev2
HSP90B2P
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000559111
Biotype: processed_pseudogene
Gene id: ENSG00000259706
Gene Name: HSP90B2P
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
15:99257768-99257796
exon
HITS-CLIP
DIRECT
LncBasev2
15:99257768-99257796
exon
HITS-CLIP
DIRECT
LncBasev2
HSPD1P1
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000503199
Biotype: processed_pseudogene
Gene id: ENSG00000213430
Gene Name: HSPD1P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:21883435-21883463
exon
HITS-CLIP
DIRECT
LncBasev2
HSPD1P5
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000511127
Biotype: processed_pseudogene
Gene id: ENSG00000249193
Gene Name: HSPD1P5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:144846471-144846499
exon
HITS-CLIP
DIRECT
LncBasev2
LINC00657
hsa-miR-21-5p
0.435
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000565493
Biotype: lincRNA
Gene id: ENSG00000260032
Gene Name: LINC00657
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:36046417-36046445
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:36046417-36046445
exon
HITS-CLIP
DIRECT
LncBasev2
LINC00668
hsa-miR-21-5p
0.401
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000580197
Biotype: lincRNA
Gene id: ENSG00000265933
Gene Name: LINC00668
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
18:6926649-6926677
exon
HITS-CLIP
DIRECT
LncBasev2
LINC00674
hsa-miR-21-5p
0.602
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000620266
Biotype: lincRNA
Gene id: ENSG00000278730
Gene Name: LINC00674
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:68129283-68129311
exon
HITS-CLIP
DIRECT
LncBasev2
LINC00883
hsa-miR-21-5p
0.381
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000466734
Biotype: lincRNA
Gene id: ENSG00000243701
Gene Name: LINC00883
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:107246564-107246592
exon
HITS-CLIP
DIRECT
LncBasev2
LINC00938
hsa-miR-21-5p
0.854
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000609803
Biotype: lincRNA
Gene id: ENSG00000273015
Gene Name: LINC00938
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
12:45718521-45718549
exon
HITS-CLIP
DIRECT
LncBasev2
12:45720452-45720480
exon
HITS-CLIP
DIRECT
LncBasev2
LL22NC03-22D1.1
hsa-miR-21-5p
0.779
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
22:34480672-34480700
exon
HITS-CLIP
DIRECT
LncBasev2
LOC101928882
hsa-miR-21-5p
0.452
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: NR_109986.1
Biotype: sense
Gene id: NR_109986.1 (gene)
Gene Name: LOC101928882
UCSC graphic: -
Expression: -

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
3:180781976-180782004
exon
HITS-CLIP
DIRECT
LncBasev2
LRRC75A-AS1
hsa-miR-21-5p
0.437
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000497774
Biotype: retained_intron
Gene id: ENSG00000175061
Gene Name: LRRC75A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:16441907-16441935
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:16441907-16441935
exon
HITS-CLIP
DIRECT
LncBasev2
MALAT1
hsa-miR-21-5p
0.611
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
11:65499773-65499801
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500537-65500565
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500577-65500605
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505950-65505978
exon
HITS-CLIP
DIRECT
LncBasev2
11:65499773-65499816
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500537-65500565
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500101-65500129
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500138-65500166
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500450-65500478
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500577-65500605
exon
HITS-CLIP
DIRECT
LncBasev2
11:65499090-65499118
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500577-65500605
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500537-65500565
exon
HITS-CLIP
DIRECT
LncBasev2
11:65499090-65499118
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505950-65505978
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500138-65500166
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500450-65500478
exon
HITS-CLIP
DIRECT
LncBasev2
11:65499788-65499816
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500537-65500565
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500450-65500478
exon
HITS-CLIP
DIRECT
LncBasev2
11:65499773-65499816
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500101-65500129
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500577-65500605
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500138-65500166
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505950-65505978
exon
HITS-CLIP
DIRECT
LncBasev2
11:65499090-65499118
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500138-65500166
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500101-65500129
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500577-65500605
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500450-65500478
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500537-65500565
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500450-65500478
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500138-65500166
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HMSC
IP
Tested Cell Line: HMSC
Category: Stem/Progenitor
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65503171-65503199
exon
HITS-CLIP
DIRECT
LncBasev2
11:65499889-65499917
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500101-65500129
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505950-65505978
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503171-65503199
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505950-65505978
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500450-65500478
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505950-65505978
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65499773-65499816
exon
HITS-CLIP
DIRECT
LncBasev2
11:65499090-65499118
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503171-65503199
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500101-65500129
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505950-65505978
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500577-65500605
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500138-65500166
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505950-65505978
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500101-65500129
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500577-65500605
exon
HITS-CLIP
DIRECT
LncBasev2
11:65499773-65499816
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500138-65500166
exon
HITS-CLIP
DIRECT
LncBasev2
11:65502873-65502901
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500537-65500565
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65500101-65500129
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505950-65505978
exon
HITS-CLIP
DIRECT
LncBasev2
11:65499788-65499816
exon
HITS-CLIP
DIRECT
LncBasev2
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRN.
Location
Region
Method
Result
Validation Type
Source
11:65499773-65499816
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65499090-65499118
exon
HITS-CLIP
DIRECT
LncBasev2
MCTS2P
hsa-miR-21-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000394552
Biotype: processed_pseudogene
Gene id: ENSG00000101898
Gene Name: MCTS2P
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:31547844-31547872
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept