LncBase Experimental v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-631N16.2
hsa-miR-20b-5p
0.784
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000550290
Biotype: lincRNA
Gene id: ENSG00000257354
Gene Name: RP11-631N16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:62617346-62617374
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-680F20.11
hsa-miR-20b-5p
0.762
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000583165
Biotype: lincRNA
Gene id: ENSG00000263906
Gene Name: RP11-680F20.11
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:125928486-125928514
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-168L15.5
hsa-miR-20b-5p
0.721
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000568025
Biotype: antisense
Gene id: ENSG00000261420
Gene Name: RP1-168L15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:166384253-166384281
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-773H22.2
hsa-miR-20b-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000587313
Biotype: processed_pseudogene
Gene id: ENSG00000267336
Gene Name: RP11-773H22.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
18:12913458-12913486
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-7F18.2
hsa-miR-20b-5p
0.425
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000607397
Biotype: lincRNA
Gene id: ENSG00000271966
Gene Name: RP11-7F18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
8:67343986-67344014
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-7K24.3
hsa-miR-20b-5p
0.835
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000562471
Biotype: lincRNA
Gene id: ENSG00000261068
Gene Name: RP11-7K24.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:42093890-42093918
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-815J4.6
hsa-miR-20b-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000591780
Biotype: processed_transcript
Gene id: ENSG00000256616
Gene Name: RP11-815J4.6
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
18:12073956-12073984
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-819M15.1
hsa-miR-20b-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000531301
Biotype: processed_pseudogene
Gene id: ENSG00000213252
Gene Name: RP11-819M15.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:106827791-106827819
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:106827791-106827819
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-81A1.6
hsa-miR-20b-5p
0.920
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000618835
Biotype: sense_intronic
Gene id: ENSG00000278600
Gene Name: RP11-81A1.6
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
15:79920912-79920940
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-909M7.3
hsa-miR-20b-5p
0.929
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: NR_110178.1
Biotype: lincRNA
Gene id: NR_110178.1 (gene)
Gene Name: RP11-909M7.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:100985641-100985669
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-98D18.17
hsa-miR-20b-5p
0.469
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000601909
Biotype: lincRNA
Gene id: ENSG00000269489
Gene Name: RP11-98D18.17
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
1:151798120-151798148
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-309I22.2
hsa-miR-20b-5p
0.853
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HMSC
IP
Tested Cell Line: HMSC
Category: Stem/Progenitor
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:32862963-32862991
exon
HITS-CLIP
DIRECT
LncBasev2
RP13-514E23.1
hsa-miR-20b-5p
0.508
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000564854
Biotype: sense_overlapping
Gene id: ENSG00000261496
Gene Name: RP13-514E23.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:86013141-86013169
exon
HITS-CLIP
DIRECT
LncBasev2
RP13-75G22.1
hsa-miR-20b-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000448218
Biotype: processed_pseudogene
Gene id: ENSG00000237752
Gene Name: RP13-75G22.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
X:97907415-97907443
exon
HITS-CLIP
DIRECT
LncBasev2
RP13-88F20.1
hsa-miR-20b-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000441188
Biotype: processed_pseudogene
Gene id: ENSG00000234130
Gene Name: RP13-88F20.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:93223832-93223871
exon
HITS-CLIP
DIRECT
LncBasev2
RP3-468B3.2
hsa-miR-20b-5p
0.606
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000451317
Biotype: lincRNA
Gene id: ENSG00000233183
Gene Name: RP3-468B3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:33926311-33926339
exon
HITS-CLIP
DIRECT
LncBasev2
RP3-514P16.1
hsa-miR-20b-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000392722
Biotype: processed_pseudogene
Gene id: ENSG00000237682
Gene Name: RP3-514P16.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:101538032-101538060
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-725G10.4
hsa-miR-20b-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000450065
Biotype: processed_pseudogene
Gene id: ENSG00000233028
Gene Name: RP4-725G10.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:56175840-56175868
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-814D15.2
hsa-miR-20b-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000429552
Biotype: processed_pseudogene
Gene id: ENSG00000225224
Gene Name: RP4-814D15.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:157192743-157192771
exon
HITS-CLIP
DIRECT
LncBasev2
RP5-1186N24.3
hsa-miR-20b-5p
0.686
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000499525
Biotype: antisense
Gene id: ENSG00000246350
Gene Name: RP5-1186N24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary

miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
6:28589379-28589414
exon
HITS-CLIP
DIRECT
LncBasev2
6:28589379-28589414
exon
HITS-CLIP
DIRECT
LncBasev2
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