LncBase Experimental v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-215D10.1
hsa-miR-20a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000527539
Biotype: processed_pseudogene
Gene id: ENSG00000254406
Gene Name: RP11-215D10.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Publication
Tissue
Cell Type
Methods
Hafner M. et al. 2010
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:119822126-119822154
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-215G15.5
hsa-miR-20a-5p
0.513
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000607560
Biotype: lincRNA
Gene id: ENSG00000272016
Gene Name: RP11-215G15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Publication
Tissue
Cell Type
Methods
Skalsky Rebecca L. et al. 2012
EF3DAGO2
IP
Tested Cell Line: EF3DAGO2
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:10655662-10655690
exon
PAR-CLIP
DIRECT
LncBasev2
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRN.
Location
Region
Method
Result
Validation Type
Source
5:10657305-10657333
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-226L15.5
hsa-miR-20a-5p
0.543
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000562313
Biotype: sense_overlapping
Gene id: ENSG00000260766
Gene Name: RP11-226L15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Publication
Tissue
Cell Type
Methods
Skalsky Rebecca L. et al. 2012
LCLBACD1
IP
Tested Cell Line: LCLBACD1
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:160025507-160025535
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-282O18.3
hsa-miR-20a-5p
0.399
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000541002
Biotype: antisense
Gene id: ENSG00000235423
Gene Name: RP11-282O18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:123261140-123261168
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-290F5.2
hsa-miR-20a-5p
0.694
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000317596
Biotype: lincRNA
Gene id: ENSG00000180712
Gene Name: RP11-290F5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Colon Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:184353319-184353347
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-290F5.2
hsa-miR-20a-5p
0.584
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: NR_040108.1
Biotype: lincRNA
Gene id: NR_040108.1 (gene)
Gene Name: RP11-290F5.2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:184353319-184353347
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-30K9.6
hsa-miR-20a-5p
0.408
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000500929
Biotype: lincRNA
Gene id: ENSG00000245975
Gene Name: RP11-30K9.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:58768837-58768865
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-321C24.4
hsa-miR-20a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000622219
Biotype: unprocessed_pseudogene
Gene id: ENSG00000277358
Gene Name: RP11-321C24.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:45124098-45124126
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-365O16.1
hsa-miR-20a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000415453
Biotype: processed_pseudogene
Gene id: ENSG00000236773
Gene Name: RP11-365O16.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
1:224175532-224175560
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:224175532-224175560
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-366H4.1
hsa-miR-20a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000502419
Biotype: lincRNA
Gene id: ENSG00000248370
Gene Name: RP11-366H4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
- Placenta Normal/Primary
- Testes Normal/Primary

miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:188160947-188160975
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-379H18.1
hsa-miR-20a-5p
0.447
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000605778
Biotype: antisense
Gene id: ENSG00000271122
Gene Name: RP11-379H18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:35697241-35697269
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-380B4.3
hsa-miR-20a-5p
0.875
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000617901
Biotype: lincRNA
Gene id: ENSG00000277151
Gene Name: RP11-380B4.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:32788134-32788162
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-383H13.1
hsa-miR-20a-5p
0.445
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000457356
Biotype: antisense
Gene id: ENSG00000235531
Gene Name: RP11-383H13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Publication
Tissue
Cell Type
Methods
Inna Lipchina et al. 2011
Embryo
ESC
IP
Tested Cell Line: ESC
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:72052857-72052885
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-399O19.9
hsa-miR-20a-5p
0.982
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000562983
Biotype: sense_overlapping
Gene id: ENSG00000261438
Gene Name: RP11-399O19.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:89017006-89017034
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-429D19.1
hsa-miR-20a-5p
0.585
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000560248
Biotype: sense_intronic
Gene id: ENSG00000259771
Gene Name: RP11-429D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Publication
Tissue
Cell Type
Methods
Inna Lipchina et al. 2011
Embryo
ESC
IP
Tested Cell Line: ESC
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:59270915-59270943
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-435F17.3
hsa-miR-20a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000478867
Biotype: processed_pseudogene
Gene id: ENSG00000241889
Gene Name: RP11-435F17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant

miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kishore S et al. 2011
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:113885757-113885785
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-466P24.2
hsa-miR-20a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000506621
Biotype: processed_pseudogene
Gene id: ENSG00000254893
Gene Name: RP11-466P24.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:76173991-76174019
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-475J5.8
hsa-miR-20a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000603219
Biotype: processed_pseudogene
Gene id: ENSG00000270388
Gene Name: RP11-475J5.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Publication
Tissue
Cell Type
Methods
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRNA.
Location
Region
Method
Result
Validation Type
Source
5:100051234-100051262
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-553L6.5
hsa-miR-20a-5p
0.997
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000570269
Biotype: lincRNA
Gene id: ENSG00000259976
Gene Name: RP11-553L6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:114314736-114314764
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:114314574-114314602
exon
HITS-CLIP
DIRECT
LncBasev2
Skalsky Rebecca L. et al. 2012
EF3DAGO2
IP
Tested Cell Line: EF3DAGO2
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:114314736-114314764
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-611O2.3
hsa-miR-20a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000537570
Biotype: processed_pseudogene
Gene id: ENSG00000256664
Gene Name: RP11-611O2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
12:68842008-68842036
exon
HITS-CLIP
DIRECT
LncBasev2
12:68842008-68842036
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:68842008-68842036
exon
HITS-CLIP
DIRECT
LncBasev2
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:68842008-68842036
exon
PAR-CLIP
DIRECT
LncBasev2
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRNA.
Location
Region
Method
Result
Validation Type
Source
12:68842008-68842036
exon
HITS-CLIP
DIRECT
LncBasev2
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