LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200c-3p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
NEAT1
hsa-miR-200c-3p
0.391
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: NR_028272.1
Biotype: lincRNA
Gene id: NR_028272.1 (gene)
Gene Name: NEAT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:hippuristanol
Location
Region
Method
Result
Validation Type
Source
11:65426312-65426340
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426312-65426340
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426312-65426340
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65426312-65426340
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426312-65426340
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65426312-65426340
exon
HITS-CLIP
DIRECT
LncBasev2
NUDT16P1
hsa-miR-200c-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000499077
Biotype: processed_transcript
Gene id: ENSG00000246082
Gene Name: NUDT16P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:131364928-131364956
exon
PAR-CLIP
DIRECT
LncBasev2
PABPC1P4
hsa-miR-200c-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000539977
Biotype: processed_pseudogene
Gene id: ENSG00000255642
Gene Name: PABPC1P4
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:63822495-63822523
exon
HITS-CLIP
DIRECT
LncBasev2
PDIA3P1
hsa-miR-200c-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000471856
Biotype: processed_pseudogene
Gene id: ENSG00000180867
Gene Name: PDIA3P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:147179152-147179180
exon
HITS-CLIP
DIRECT
LncBasev2
RALGAPA1P
hsa-miR-200c-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000443361
Biotype: processed_pseudogene
Gene id: ENSG00000229419
Gene Name: RALGAPA1P
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:105526050-105526078
exon
HITS-CLIP
DIRECT
LncBasev2
9:105525659-105525687
exon
HITS-CLIP
DIRECT
LncBasev2
RBMS1P1
hsa-miR-200c-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000417216
Biotype: processed_pseudogene
Gene id: ENSG00000225422
Gene Name: RBMS1P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:66234462-66234490
exon
HITS-CLIP
DIRECT
LncBasev2
RNF216P1
hsa-miR-200c-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000471244
Biotype: processed_transcript
Gene id: ENSG00000196204
Gene Name: RNF216P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:4998106-4998134
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-1094M14.11
hsa-miR-200c-3p
0.770
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000592381
Biotype: lincRNA
Gene id: ENSG00000267321
Gene Name: RP11-1094M14.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:35573946-35573974
exon
PAR-CLIP
DIRECT
LncBasev2
17:35573946-35573974
exon
PAR-CLIP
DIRECT
LncBasev2
Inna Lipchina et al. 2011
Embryo
ESC
IP
Tested Cell Line: ESC
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:35573946-35573974
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-138A9.1
hsa-miR-200c-3p
0.485
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000605249
Biotype: lincRNA
Gene id: ENSG00000271204
Gene Name: RP11-138A9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:130931740-130931768
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-141M1.1
hsa-miR-200c-3p
0.494
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000443576
Biotype: lincRNA
Gene id: ENSG00000227911
Gene Name: RP11-141M1.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:33334035-33334063
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-145M9.4
hsa-miR-200c-3p
0.535
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000595265
Biotype: lincRNA
Gene id: ENSG00000269728
Gene Name: RP11-145M9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:179396551-179396579
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-148B6.1
hsa-miR-200c-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000510655
Biotype: antisense
Gene id: ENSG00000249532
Gene Name: RP11-148B6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Publication
Tissue
Cell Type
Methods
Inna Lipchina et al. 2011
Embryo
ESC
IP
Tested Cell Line: ESC
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:112646766-112646794
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-1E1.2
hsa-miR-200c-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000603335
Biotype: processed_pseudogene
Gene id: ENSG00000271676
Gene Name: RP11-1E1.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
4:77112496-77112524
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-215G15.5
hsa-miR-200c-3p
0.441
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000607560
Biotype: lincRNA
Gene id: ENSG00000272016
Gene Name: RP11-215G15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Publication
Tissue
Cell Type
Methods
Skalsky Rebecca L. et al. 2012
EF3DAGO2
IP
Tested Cell Line: EF3DAGO2
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:10655679-10655707
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-29G8.3
hsa-miR-200c-3p
0.445
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000563635
Biotype: processed_transcript
Gene id: ENSG00000261553
Gene Name: RP11-29G8.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
13:75713234-75713262
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-312J18.5
hsa-miR-200c-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000425270
Biotype: processed_pseudogene
Gene id: ENSG00000213080
Gene Name: RP11-312J18.5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:160895219-160895247
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-352E6.2
hsa-miR-200c-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000509155
Biotype: processed_pseudogene
Gene id: ENSG00000249780
Gene Name: RP11-352E6.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Publication
Tissue
Cell Type
Methods
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRNA.
Location
Region
Method
Result
Validation Type
Source
4:12640356-12640384
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-409C19.2
hsa-miR-200c-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000519029
Biotype: processed_pseudogene
Gene id: ENSG00000253223
Gene Name: RP11-409C19.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:66984771-66984799
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-446E9.1
hsa-miR-200c-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000435260
Biotype: processed_pseudogene
Gene id: ENSG00000236814
Gene Name: RP11-446E9.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:56051086-56051114
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-473I1.5
hsa-miR-200c-3p
0.403
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000565648
Biotype: antisense
Gene id: ENSG00000260349
Gene Name: RP11-473I1.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
16:9106841-9106869
exon
HITS-CLIP
DIRECT
LncBasev2
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