LncBase Experimental v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-73M18.8
hsa-miR-19b-3p
0.451
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000602422
Biotype: sense_intronic
Gene id: ENSG00000269958
Gene Name: RP11-73M18.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:103696525-103696553
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-753A21.2
hsa-miR-19b-3p
0.575
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000562480
Biotype: lincRNA
Gene id: ENSG00000259870
Gene Name: RP11-753A21.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
15:97877545-97877573
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-758N13.1
hsa-miR-19b-3p
0.465
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000558441
Biotype: lincRNA
Gene id: ENSG00000259721
Gene Name: RP11-758N13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Skalsky Rebecca L. et al. 2012
LCLBACD3
IP
Tested Cell Line: LCLBACD3
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:32718681-32718709
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-760H22.2
hsa-miR-19b-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000574086
Biotype: lincRNA
Gene id: ENSG00000254343
Gene Name: RP11-760H22.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:120054766-120054794
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-798K23.5
hsa-miR-19b-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000521868
Biotype: processed_pseudogene
Gene id: ENSG00000253520
Gene Name: RP11-798K23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:179527196-179527224
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-806L2.2
hsa-miR-19b-3p
0.740
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000585150
Biotype: antisense
Gene id: ENSG00000266456
Gene Name: RP11-806L2.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
18:650236-650264
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-888D10.4
hsa-miR-19b-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000609701
Biotype: sense_intronic
Gene id: ENSG00000273284
Gene Name: RP11-888D10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
18:9259997-9260025
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-92K15.3
hsa-miR-19b-3p
0.873
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000607017
Biotype: lincRNA
Gene id: ENSG00000272264
Gene Name: RP11-92K15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:80032772-80032800
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-933H2.4
hsa-miR-19b-3p
0.522
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000502521
Biotype: antisense
Gene id: ENSG00000250608
Gene Name: RP11-933H2.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:131325727-131325755
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-981G7.1
hsa-miR-19b-3p
0.783
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000562242
Biotype: sense_overlapping
Gene id: ENSG00000261451
Gene Name: RP11-981G7.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:10437654-10437682
exon
HITS-CLIP
DIRECT
LncBasev2
8:10437216-10437244
exon
HITS-CLIP
DIRECT
LncBasev2
8:10437174-10437202
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-309I22.2
hsa-miR-19b-3p
0.574
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:32861193-32861221
exon
HITS-CLIP
DIRECT
LncBasev2
RP13-75G22.1
hsa-miR-19b-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000448218
Biotype: processed_pseudogene
Gene id: ENSG00000237752
Gene Name: RP13-75G22.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRNA.
Location
Region
Method
Result
Validation Type
Source
X:97907405-97907433
exon
HITS-CLIP
DIRECT
LncBasev2
RP13-977J11.2
hsa-miR-19b-3p
0.590
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000538731
Biotype: lincRNA
Gene id: ENSG00000256576
Gene Name: RP13-977J11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:132186851-132186879
exon
HITS-CLIP
DIRECT
LncBasev2
RP3-368A4.6
hsa-miR-19b-3p
0.541
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000604070
Biotype: sense_intronic
Gene id: ENSG00000271533
Gene Name: RP3-368A4.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:74211745-74211773
exon
HITS-CLIP
DIRECT
LncBasev2
X:74210437-74210465
exon
HITS-CLIP
DIRECT
LncBasev2
RP3-423B22.5
hsa-miR-19b-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000423216
Biotype: processed_pseudogene
Gene id: ENSG00000237749
Gene Name: RP3-423B22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:37556370-37556398
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-584D14.7
hsa-miR-19b-3p
0.475
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000563946
Biotype: sense_overlapping
Gene id: ENSG00000261305
Gene Name: RP4-584D14.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
7:150342400-150342428
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-605O3.4
hsa-miR-19b-3p
0.681
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000548468
Biotype: antisense
Gene id: ENSG00000272368
Gene Name: RP4-605O3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Skalsky Rebecca L. et al. 2012
LCL35
IP
Tested Cell Line: LCL35
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:50165516-50165544
exon
PAR-CLIP
DIRECT
LncBasev2
RP4-622L5.2
hsa-miR-19b-3p
0.429
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000515055
Biotype: sense_intronic
Gene id: ENSG00000250135
Gene Name: RP4-622L5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:32171132-32171160
exon
PAR-CLIP
DIRECT
LncBasev2
1:32171132-32171160
exon
PAR-CLIP
DIRECT
LncBasev2
Skalsky Rebecca L. et al. 2012
EF3DAGO2
IP
Tested Cell Line: EF3DAGO2
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:32171132-32171160
exon
PAR-CLIP
DIRECT
LncBasev2
1:32171132-32171160
exon
PAR-CLIP
DIRECT
LncBasev2
Hafner M. et al. 2010
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:32171132-32171160
exon
PAR-CLIP
DIRECT
LncBasev2
Sebastian Memczak et al. 2013
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:32171132-32171160
exon
PAR-CLIP
DIRECT
LncBasev2
Kishore S et al. 2011
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:32171132-32171160
exon
PAR-CLIP
DIRECT
LncBasev2
RP4-769N13.6
hsa-miR-19b-3p
0.365
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000476910
Biotype: processed_transcript
Gene id: ENSG00000271147
Gene Name: RP4-769N13.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:102640506-102640534
exon
HITS-CLIP
DIRECT
LncBasev2
RP5-1159O4.2
hsa-miR-19b-3p
0.694
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000608770
Biotype: lincRNA
Gene id: ENSG00000272732
Gene Name: RP5-1159O4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:7550891-7550919
exon
HITS-CLIP
DIRECT
LncBasev2
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