LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-178L8.7
hsa-miR-199a-5p
0.378
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000602282
Biotype: antisense
Gene id: ENSG00000270006
Gene Name: RP11-178L8.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
16:87317562-87317590
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-210N13.4
hsa-miR-199a-5p
0.595
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000621343
Biotype: lincRNA
Gene id: ENSG00000276981
Gene Name: RP11-210N13.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
12:43789225-43789253
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-214K3.20
hsa-miR-199a-5p
0.442
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000602601
Biotype: sense_intronic
Gene id: ENSG00000269938
Gene Name: RP11-214K3.20
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:123968295-123968323
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-234K24.3
hsa-miR-199a-5p
0.590
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000441208
Biotype: antisense
Gene id: ENSG00000232406
Gene Name: RP11-234K24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant

miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Publication
Tissue
Cell Type
Methods
Skalsky Rebecca L. et al. 2012
LCLBACD1
IP
Tested Cell Line: LCLBACD1
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:36151163-36151191
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-242D8.1
hsa-miR-199a-5p
0.442
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000590740
Biotype: lincRNA
Gene id: ENSG00000267002
Gene Name: RP11-242D8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:43167225-43167253
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-255H23.2
hsa-miR-199a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: ENST00000472297
Biotype: transcribed_unprocessed_pseudogene
Gene id: ENSG00000233836
Gene Name: RP11-255H23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
19:23832679-23832707
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-279E1.1
hsa-miR-199a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000445989
Biotype: processed_pseudogene
Gene id: ENSG00000228132
Gene Name: RP11-279E1.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
9:6276634-6276662
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-348P10.2
hsa-miR-199a-5p
0.369
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000606008
Biotype: lincRNA
Gene id: ENSG00000272077
Gene Name: RP11-348P10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:44668306-44668334
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-372E1.1
hsa-miR-199a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000489462
Biotype: processed_pseudogene
Gene id: ENSG00000240950
Gene Name: RP11-372E1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:142827572-142827600
exon
HITS-CLIP
DIRECT
LncBasev2
3:142827572-142827600
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-395B7.7
hsa-miR-199a-5p
0.611
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000564977
Biotype: sense_overlapping
Gene id: ENSG00000260336
Gene Name: RP11-395B7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:101095739-101095767
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-3K16.2
hsa-miR-199a-5p
0.559
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000469794
Biotype: sense_intronic
Gene id: ENSG00000242795
Gene Name: RP11-3K16.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:169613692-169613720
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-405A12.1
hsa-miR-199a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000414406
Biotype: processed_pseudogene
Gene id: ENSG00000256849
Gene Name: RP11-405A12.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:19941773-19941801
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-405K6.1
hsa-miR-199a-5p
0.396
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000533049
Biotype: lincRNA
Gene id: ENSG00000254456
Gene Name: RP11-405K6.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
11:25777764-25777792
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-444D3.1
hsa-miR-199a-5p
0.643
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000540811
Biotype: lincRNA
Gene id: ENSG00000255864
Gene Name: RP11-444D3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor

miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:hippuristanol
Location
Region
Method
Result
Validation Type
Source
12:24213354-24213382
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-462L8.2
hsa-miR-199a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000468834
Biotype: processed_pseudogene
Gene id: ENSG00000235962
Gene Name: RP11-462L8.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:33057698-33057726
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-475C16.1
hsa-miR-199a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000492974
Biotype: processed_pseudogene
Gene id: ENSG00000218426
Gene Name: RP11-475C16.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS27a
IP
Tested Cell Line: HS27a
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:153282446-153282474
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:153282446-153282474
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-54O7.3
hsa-miR-199a-5p
0.486
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000609207
Biotype: retained_intron
Gene id: ENSG00000223764
Gene Name: RP11-54O7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
1:917898-917926
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-552O4.2
hsa-miR-199a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000583051
Biotype: processed_pseudogene
Gene id: ENSG00000266184
Gene Name: RP11-552O4.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
18:26832143-26832171
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-556I13.2
hsa-miR-199a-5p
0.483
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000595842
Biotype: antisense
Gene id: ENSG00000268170
Gene Name: RP11-556I13.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
7:143221887-143221915
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-578C11.2
hsa-miR-199a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000577519
Biotype: unprocessed_pseudogene
Gene id: ENSG00000266356
Gene Name: RP11-578C11.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:27412726-27412754
exon
HITS-CLIP
DIRECT
LncBasev2
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