LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-102M11.1
hsa-miR-182-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000468074
Biotype: processed_pseudogene
Gene id: ENSG00000240695
Gene Name: RP11-102M11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:136736646-136736674
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-1069G10.1
hsa-miR-182-5p
0.600
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000558888
Biotype: antisense
Gene id: ENSG00000259370
Gene Name: RP11-1069G10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant

miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
15:62833813-62833841
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-22C8.1
hsa-miR-182-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000522657
Biotype: processed_pseudogene
Gene id: ENSG00000233109
Gene Name: RP11-22C8.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:48914069-48914107
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-241I20.4
hsa-miR-182-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000435436
Biotype: processed_pseudogene
Gene id: ENSG00000235113
Gene Name: RP11-241I20.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:hippuristanol
Location
Region
Method
Result
Validation Type
Source
10:32109844-32109872
exon
HITS-CLIP
DIRECT
LncBasev2
10:32109844-32109872
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-252I14.1
hsa-miR-182-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000484005
Biotype: processed_pseudogene
Gene id: ENSG00000229721
Gene Name: RP11-252I14.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
5:180226545-180226573
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-283I3.6
hsa-miR-182-5p
0.618
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000570140
Biotype: sense_overlapping
Gene id: ENSG00000261799
Gene Name: RP11-283I3.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
12:274436-274464
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-290L1.4
hsa-miR-182-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000552477
Biotype: processed_pseudogene
Gene id: ENSG00000257941
Gene Name: RP11-290L1.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:76057665-76057693
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-293M10.2
hsa-miR-182-5p
0.390
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000555909
Biotype: antisense
Gene id: ENSG00000258820
Gene Name: RP11-293M10.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
14:75271659-75271687
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-298I3.1
hsa-miR-182-5p
0.778
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000548322
Biotype: antisense
Gene id: ENSG00000257285
Gene Name: RP11-298I3.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:22955485-22955513
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-314A15.2
hsa-miR-182-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000426799
Biotype: processed_pseudogene
Gene id: ENSG00000230039
Gene Name: RP11-314A15.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:65821387-65821415
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-332H14.2
hsa-miR-182-5p
0.524
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000610036
Biotype: lincRNA
Gene id: ENSG00000272994
Gene Name: RP11-332H14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:105336966-105336994
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-342K6.1
hsa-miR-182-5p
0.428
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000604845
Biotype: antisense
Gene id: ENSG00000270696
Gene Name: RP11-342K6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:75660535-75660563
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:75660535-75660563
exon
HITS-CLIP
DIRECT
LncBasev2
2:75660535-75660563
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-358B23.7
hsa-miR-182-5p
0.772
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000617211
Biotype: sense_intronic
Gene id: ENSG00000278829
Gene Name: RP11-358B23.7
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:42275416-42275444
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-403P17.6
hsa-miR-182-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000612427
Biotype: antisense
Gene id: ENSG00000277978
Gene Name: RP11-403P17.6
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
16:66565704-66565732
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-417L14.1
hsa-miR-182-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000415694
Biotype: processed_pseudogene
Gene id: ENSG00000226535
Gene Name: RP11-417L14.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:107170224-107170252
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-419C5.2
hsa-miR-182-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000525562
Biotype: processed_transcript
Gene id: ENSG00000226232
Gene Name: RP11-419C5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:69982355-69982383
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-438B23.2
hsa-miR-182-5p
0.614
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000566293
Biotype: sense_overlapping
Gene id: ENSG00000260412
Gene Name: RP11-438B23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant

miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:27941134-27941162
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-146I3.1
hsa-miR-182-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000488095
Biotype: processed_pseudogene
Gene id: ENSG00000176043
Gene Name: RP1-146I3.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:72929678-72929706
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-535M15.1
hsa-miR-182-5p
0.390
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000423924
Biotype: lincRNA
Gene id: ENSG00000224848
Gene Name: RP11-535M15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
9:96687099-96687127
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-587D21.1
hsa-miR-182-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000476147
Biotype: processed_pseudogene
Gene id: ENSG00000240036
Gene Name: RP11-587D21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:27581741-27581769
exon
HITS-CLIP
DIRECT
LncBasev2
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