LncBase Experimental v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-181a-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP1-178F10.3
hsa-miR-181a-5p
0.504
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000623730
Biotype: TEC
Gene id: ENSG00000267350
Gene Name: RP1-178F10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:18327705-18327733
exon
HITS-CLIP
DIRECT
LncBasev2
17:18326721-18326749
exon
HITS-CLIP
DIRECT
LncBasev2
17:18327705-18327733
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:18326721-18326749
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:18327705-18327733
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-793H13.8
hsa-miR-181a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000547717
Biotype: retained_intron
Gene id: ENSG00000257379
Gene Name: RP11-793H13.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
MDAMB231
IP
Tested Cell Line: MDAMB231
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:53461086-53461114
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:53461086-53461114
exon
HITS-CLIP
DIRECT
LncBasev2
Whisnant Adam W et al. 2013
Cervix
TZMBL
IP
Tested Cell Line: TZMBL
Category: Cancer/Malignant
Experimental Condition: shRNs against HIV-1
Location
Region
Method
Result
Validation Type
Source
12:53461086-53461114
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-799B12.4
hsa-miR-181a-5p
0.605
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000583267
Biotype: lincRNA
Gene id: ENSG00000265750
Gene Name: RP11-799B12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
18:24162053-24162081
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-79H23.3
hsa-miR-181a-5p
0.369
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000565297
Biotype: lincRNA
Gene id: ENSG00000261618
Gene Name: RP11-79H23.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:78838651-78838679
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-872J21.5
hsa-miR-181a-5p
0.615
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000618976
Biotype: sense_intronic
Gene id: ENSG00000276182
Gene Name: RP11-872J21.5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:96537208-96537236
exon
HITS-CLIP
DIRECT
LncBasev2
14:96537471-96537499
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-193H18.2
hsa-miR-181a-5p
0.454
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000588041
Biotype: lincRNA
Gene id: ENSG00000267194
Gene Name: RP1-193H18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:69552102-69552130
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-9E17.1
hsa-miR-181a-5p
0.751
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000620414
Biotype: sense_intronic
Gene id: ENSG00000277534
Gene Name: RP11-9E17.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
18:26543197-26543225
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-228H13.1
hsa-miR-181a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000600955
Biotype: processed_pseudogene
Gene id: ENSG00000227311
Gene Name: RP1-228H13.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:40333401-40333429
exon
HITS-CLIP
DIRECT
LncBasev2
1:40333358-40333386
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-228H13.5
hsa-miR-181a-5p
0.625
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000565390
Biotype: sense_overlapping
Gene id: ENSG00000260920
Gene Name: RP1-228H13.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:40465139-40465167
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-239B22.5
hsa-miR-181a-5p
0.443
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000568280
Biotype: antisense
Gene id: ENSG00000260196
Gene Name: RP1-239B22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:17383045-17383073
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-257A7.4
hsa-miR-181a-5p
0.380
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000606150
Biotype: antisense
Gene id: ENSG00000215022
Gene Name: RP1-257A7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:13294884-13294912
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-309I22.2
hsa-miR-181a-5p
0.938
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:32862929-32862957
exon
HITS-CLIP
DIRECT
LncBasev2
22:32860161-32860189
exon
HITS-CLIP
DIRECT
LncBasev2
RP13-298C8.3
hsa-miR-181a-5p
0.760
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000620491
Biotype: lincRNA
Gene id: ENSG00000276382
Gene Name: RP13-298C8.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:121648782-121648810
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-60N8.1
hsa-miR-181a-5p
0.433
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000433228
Biotype: sense_intronic
Gene id: ENSG00000235834
Gene Name: RP1-60N8.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:17586598-17586626
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-622L5.2
hsa-miR-181a-5p
0.423
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000515055
Biotype: sense_intronic
Gene id: ENSG00000250135
Gene Name: RP4-622L5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:32176418-32176446
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:32176418-32176446
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:32176418-32176465
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:32176418-32176446
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-758J24.5
hsa-miR-181a-5p
0.651
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000606641
Biotype: lincRNA
Gene id: ENSG00000272091
Gene Name: RP4-758J24.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:54026892-54026920
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-785G19.5
hsa-miR-181a-5p
0.604
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000512005
Biotype: sense_overlapping
Gene id: ENSG00000250917
Gene Name: RP4-785G19.5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:34281121-34281149
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-814D15.2
hsa-miR-181a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000429552
Biotype: processed_pseudogene
Gene id: ENSG00000225224
Gene Name: RP4-814D15.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:157192767-157192795
exon
HITS-CLIP
DIRECT
LncBasev2
7:157192713-157192741
exon
HITS-CLIP
DIRECT
LncBasev2
RP5-1172N10.4
hsa-miR-181a-5p
0.859
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000602481
Biotype: sense_intronic
Gene id: ENSG00000269941
Gene Name: RP5-1172N10.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:41233823-41233851
exon
HITS-CLIP
DIRECT
LncBasev2
X:41234224-41234252
exon
HITS-CLIP
DIRECT
LncBasev2
RP6-191P20.4
hsa-miR-181a-5p
0.753
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000430140
Biotype: antisense
Gene id: ENSG00000236064
Gene Name: RP6-191P20.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:107894624-107894652
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by:
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