LncBase Experimental v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-181a-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-54D18.2
hsa-miR-181a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000502889
Biotype: unprocessed_pseudogene
Gene id: ENSG00000215237
Gene Name: RP11-54D18.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:15017446-15017474
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-553L6.5
hsa-miR-181a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000570269
Biotype: lincRNA
Gene id: ENSG00000259976
Gene Name: RP11-553L6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:114314604-114314632
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-56P23.1
hsa-miR-181a-5p
0.576
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000391366
Biotype: sense_intronic
Gene id: ENSG00000212670
Gene Name: RP11-56P23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:54106022-54106050
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-582E3.6
hsa-miR-181a-5p
0.576
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000620519
Biotype: lincRNA
Gene id: ENSG00000275764
Gene Name: RP11-582E3.6
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:27038848-27038876
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:27038848-27038876
exon
HITS-CLIP
DIRECT
LncBasev2
Kishore S et al. 2011
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:27038848-27038876
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-588K22.2
hsa-miR-181a-5p
0.623
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000569449
Biotype: sense_overlapping
Gene id: ENSG00000260244
Gene Name: RP11-588K22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:155736943-155736971
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-597D13.7
hsa-miR-181a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000512016
Biotype: processed_transcript
Gene id: ENSG00000251429
Gene Name: RP11-597D13.7
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:158270376-158270404
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-603J24.7
hsa-miR-181a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000552016
Biotype: processed_pseudogene
Gene id: ENSG00000237493
Gene Name: RP11-603J24.7
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:55980560-55980588
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-627G23.1
hsa-miR-181a-5p
0.456
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000528482
Biotype: lincRNA
Gene id: ENSG00000255545
Gene Name: RP11-627G23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:134486767-134486795
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-631N16.2
hsa-miR-181a-5p
0.551
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000550290
Biotype: lincRNA
Gene id: ENSG00000257354
Gene Name: RP11-631N16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:62617287-62617337
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-641A6.9
hsa-miR-181a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000549824
Biotype: processed_pseudogene
Gene id: ENSG00000257675
Gene Name: RP11-641A6.9
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:52749507-52749535
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-65L3.1
hsa-miR-181a-5p
0.859
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000565104
Biotype: lincRNA
Gene id: ENSG00000260931
Gene Name: RP11-65L3.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:178402803-178402846
exon
HITS-CLIP
DIRECT
LncBasev2
2:178402818-178402846
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-673E1.1
hsa-miR-181a-5p
0.517
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000509873
Biotype: lincRNA
Gene id: ENSG00000251600
Gene Name: RP11-673E1.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:143981961-143981989
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-689K5.3
hsa-miR-181a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000508294
Biotype: lincRNA
Gene id: ENSG00000251331
Gene Name: RP11-689K5.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:81802832-81802860
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-690D19.3
hsa-miR-181a-5p
0.708
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000561652
Biotype: sense_overlapping
Gene id: ENSG00000260966
Gene Name: RP11-690D19.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:103051634-103051662
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-69L16.5
hsa-miR-181a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000407940
Biotype: processed_pseudogene
Gene id: ENSG00000220472
Gene Name: RP11-69L16.5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:7339395-7339423
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-707A18.1
hsa-miR-181a-5p
0.976
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000509932
Biotype: lincRNA
Gene id: ENSG00000250125
Gene Name: RP11-707A18.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:64914340-64914383
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-713C5.1
hsa-miR-181a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000584727
Biotype: sense_intronic
Gene id: ENSG00000265579
Gene Name: RP11-713C5.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
18:72745256-72745284
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-761E20.1
hsa-miR-181a-5p
0.416
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000430756
Biotype: lincRNA
Gene id: ENSG00000235244
Gene Name: RP11-761E20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:115918175-115918203
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-774O3.3
hsa-miR-181a-5p
0.664
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000505448
Biotype: lincRNA
Gene id: ENSG00000251615
Gene Name: RP11-774O3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:8356470-8356498
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-777B9.5
hsa-miR-181a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000510231
Biotype: processed_pseudogene
Gene id: ENSG00000249072
Gene Name: RP11-777B9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:78008684-78008712
exon
HITS-CLIP
DIRECT
LncBasev2
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