LncBase Experimental v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-181a-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-23J9.7
hsa-miR-181a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000531758
Biotype: unitary_pseudogene
Gene id: ENSG00000254633
Gene Name: RP11-23J9.7
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:97281541-97281569
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-244O19.1
hsa-miR-181a-5p
0.461
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000567068
Biotype: sense_overlapping
Gene id: ENSG00000261534
Gene Name: RP11-244O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:121816911-121816939
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-250B2.6
hsa-miR-181a-5p
0.480
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000606629
Biotype: lincRNA
Gene id: ENSG00000272129
Gene Name: RP11-250B2.6
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:80356649-80356677
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-270C12.3
hsa-miR-181a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000416095
Biotype: processed_pseudogene
Gene id: ENSG00000224550
Gene Name: RP11-270C12.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:107505381-107505409
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-297M9.2
hsa-miR-181a-5p
0.871
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000562861
Biotype: lincRNA
Gene id: ENSG00000260432
Gene Name: RP11-297M9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:9754183-9754211
exon
HITS-CLIP
DIRECT
LncBasev2
16:9754136-9754164
exon
HITS-CLIP
DIRECT
LncBasev2
16:9756983-9757011
exon
HITS-CLIP
DIRECT
LncBasev2
16:9756782-9756810
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-307P22.1
hsa-miR-181a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000556153
Biotype: processed_pseudogene
Gene id: ENSG00000258445
Gene Name: RP11-307P22.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:60780268-60780296
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-30P6.1
hsa-miR-181a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000402742
Biotype: unprocessed_pseudogene
Gene id: ENSG00000217060
Gene Name: RP11-30P6.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:85286273-85286301
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-313J2.1
hsa-miR-181a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000609841
Biotype: processed_transcript
Gene id: ENSG00000215146
Gene Name: RP11-313J2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
10:42337682-42337710
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:42336262-42336290
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:42336178-42336206
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-314B1.2
hsa-miR-181a-5p
0.951
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000609089
Biotype: lincRNA
Gene id: ENSG00000273301
Gene Name: RP11-314B1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:225700152-225700180
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-314C16.1
hsa-miR-181a-5p
0.659
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: NR_038979.1
Biotype: lincRNA
Gene id: NR_038979.1 (gene)
Gene Name: RP11-314C16.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:8436111-8436139
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-332H14.2
hsa-miR-181a-5p
0.680
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000610036
Biotype: lincRNA
Gene id: ENSG00000272994
Gene Name: RP11-332H14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:105336289-105336317
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-342K6.1
hsa-miR-181a-5p
0.579
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000604845
Biotype: antisense
Gene id: ENSG00000270696
Gene Name: RP11-342K6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:75661865-75661893
exon
HITS-CLIP
DIRECT
LncBasev2
2:75661811-75661839
exon
HITS-CLIP
DIRECT
LncBasev2
2:75661811-75661839
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-349F21.2
hsa-miR-181a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000624433
Biotype: sense_intronic
Gene id: ENSG00000279932
Gene Name: RP11-349F21.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:17510600-17510628
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-361F15.2
hsa-miR-181a-5p
0.988
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000443556
Biotype: lincRNA
Gene id: ENSG00000225135
Gene Name: RP11-361F15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:147390383-147390411
exon
HITS-CLIP
DIRECT
LncBasev2
6:147389499-147389527
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-363E7.4
hsa-miR-181a-5p
0.699
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000563205
Biotype: sense_overlapping
Gene id: ENSG00000260912
Gene Name: RP11-363E7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:19453755-19453783
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-367G18.2
hsa-miR-181a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000402798
Biotype: processed_pseudogene
Gene id: ENSG00000218208
Gene Name: RP11-367G18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:113581848-113581876
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-37B2.1
hsa-miR-181a-5p
0.725
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000621883
Biotype: lincRNA
Gene id: ENSG00000251136
Gene Name: RP11-37B2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:89720151-89720179
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-391M1.4
hsa-miR-181a-5p
0.831
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000607057
Biotype: lincRNA
Gene id: ENSG00000272452
Gene Name: RP11-391M1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Whisnant Adam W et al. 2013
Cervix
TZMBL
IP
Tested Cell Line: TZMBL
Category: Cancer/Malignant
Experimental Condition: shRNs against HIV-1
Location
Region
Method
Result
Validation Type
Source
3:40467717-40467745
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-415J8.7
hsa-miR-181a-5p
0.828
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000602618
Biotype: lincRNA
Gene id: ENSG00000270115
Gene Name: RP11-415J8.7
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:33261486-33261514
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-418J17.1
hsa-miR-181a-5p
0.376
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000440150
Biotype: antisense
Gene id: ENSG00000231365
Gene Name: RP11-418J17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:119183436-119183464
exon
HITS-CLIP
DIRECT
LncBasev2
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