LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-17-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
MALAT1
hsa-miR-17-5p
0.732
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
11:65500315-65500343
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503708-65503736
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501066-65501094
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505469-65505497
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503708-65503736
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503257-65503285
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500315-65500343
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505469-65505497
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503708-65503736
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503708-65503736
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505469-65505497
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503257-65503285
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505469-65505497
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65501066-65501094
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503708-65503736
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503257-65503285
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503257-65503285
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503708-65503736
exon
HITS-CLIP
DIRECT
LncBasev2
Inna Lipchina et al. 2011
Embryo
ESC
IP
Tested Cell Line: ESC
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65503708-65503736
exon
PAR-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
MDAMB231
IP
Tested Cell Line: MDAMB231
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65503708-65503736
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501066-65501094
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503708-65503736
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500315-65500343
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65501066-65501094
exon
HITS-CLIP
DIRECT
LncBasev2
MEG3
hsa-miR-17-5p
0.753
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000522771
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:100829221-100829249
exon
HITS-CLIP
DIRECT
LncBasev2
14:100829803-100829831
exon
HITS-CLIP
DIRECT
LncBasev2
MEG3
hsa-miR-17-5p
0.397
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: NR_046467.1
Biotype: lincRNA
Gene id: NR_046467.1 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:100829221-100829249
exon
HITS-CLIP
DIRECT
LncBasev2
MGC27345
hsa-miR-17-5p
0.804
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: NR_046216.1
Biotype: sense
Gene id: NR_046216.1 (gene)
Gene Name: MGC27345
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:128305582-128305610
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:128305379-128305407
exon
HITS-CLIP
DIRECT
LncBasev2
MIAT
hsa-miR-17-5p
0.616
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000613780
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:26665954-26665982
exon
HITS-CLIP
DIRECT
LncBasev2
MIR600HG
hsa-miR-17-5p
0.428
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000449175
Biotype: sense_intronic
Gene id: ENSG00000236901
Gene Name: MIR600HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Skalsky Rebecca L. et al. 2012
LCLBACD1
IP
Tested Cell Line: LCLBACD1
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:123110981-123111009
exon
PAR-CLIP
DIRECT
LncBasev2
MIR6080
hsa-miR-17-5p
0.957
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000578492
Biotype: processed_transcript
Gene id: ENSG00000215769
Gene Name: MIR6080
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:64749807-64749835
exon
HITS-CLIP
DIRECT
LncBasev2
MIR6723
hsa-miR-17-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000414273
Biotype: unprocessed_pseudogene
Gene id: ENSG00000237973
Gene Name: MIR6723
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRNA.
Location
Region
Method
Result
Validation Type
Source
1:632337-632365
exon
HITS-CLIP
DIRECT
LncBasev2
MIR8072
hsa-miR-17-5p
0.969
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000602918
Biotype: lincRNA
Gene id: ENSG00000256092
Gene Name: MIR8072
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:123365515-123365543
exon
HITS-CLIP
DIRECT
LncBasev2
MPRIPP1
hsa-miR-17-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000452433
Biotype: processed_pseudogene
Gene id: ENSG00000214820
Gene Name: MPRIPP1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:44580849-44580877
exon
HITS-CLIP
DIRECT
LncBasev2
MRPL3P1
hsa-miR-17-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000400109
Biotype: processed_pseudogene
Gene id: ENSG00000215349
Gene Name: MRPL3P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:19305041-19305069
exon
PAR-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:19305041-19305069
exon
HITS-CLIP
DIRECT
LncBasev2
13:19305041-19305069
exon
HITS-CLIP
DIRECT
LncBasev2
MRPS31P4
hsa-miR-17-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000509685
Biotype: transcribed_unprocessed_pseudogene
Gene id: ENSG00000250299
Gene Name: MRPS31P4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:52617675-52617703
exon
HITS-CLIP
DIRECT
LncBasev2
MYL6P1
hsa-miR-17-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 21
Transcript: ENST00000449877
Biotype: processed_pseudogene
Gene id: ENSG00000226543
Gene Name: MYL6P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRNA.
Location
Region
Method
Result
Validation Type
Source
21:43856144-43856172
exon
HITS-CLIP
DIRECT
LncBasev2
MYL6P2
hsa-miR-17-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 21
Transcript: ENST00000450079
Biotype: processed_pseudogene
Gene id: ENSG00000235808
Gene Name: MYL6P2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
21:39488498-39488526
exon
HITS-CLIP
DIRECT
LncBasev2
21:39488498-39488526
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
21:39488498-39488526
exon
HITS-CLIP
DIRECT
LncBasev2
MYL6P4
hsa-miR-17-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000477911
Biotype: processed_pseudogene
Gene id: ENSG00000240677
Gene Name: MYL6P4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
7:141811978-141812006
exon
HITS-CLIP
DIRECT
LncBasev2
NALCN-AS1
hsa-miR-17-5p
0.455
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000457843
Biotype: antisense
Gene id: ENSG00000233009
Gene Name: NALCN-AS1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Skalsky Rebecca L. et al. 2012
LCLBACD1
IP
Tested Cell Line: LCLBACD1
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:101055296-101055324
exon
PAR-CLIP
DIRECT
LncBasev2
NAP1L1P3
hsa-miR-17-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000462291
Biotype: processed_pseudogene
Gene id: ENSG00000213371
Gene Name: NAP1L1P3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
3:120806354-120806382
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:120806198-120806226
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-17-5p
0.799
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HMSC
IP
Tested Cell Line: HMSC
Category: Stem/Progenitor
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65437671-65437699
exon
HITS-CLIP
DIRECT
LncBasev2
11:65438555-65438583
exon
HITS-CLIP
DIRECT
LncBasev2
11:65437671-65437699
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65439191-65439219
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427216-65427244
exon
HITS-CLIP
DIRECT
LncBasev2
11:65431853-65431881
exon
HITS-CLIP
DIRECT
LncBasev2
11:65437782-65437810
exon
HITS-CLIP
DIRECT
LncBasev2
11:65432831-65432859
exon
HITS-CLIP
DIRECT
LncBasev2
11:65439413-65439441
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426564-65426592
exon
HITS-CLIP
DIRECT
LncBasev2
11:65436046-65436074
exon
HITS-CLIP
DIRECT
LncBasev2
11:65440997-65441048
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426564-65426592
exon
HITS-CLIP
DIRECT
LncBasev2
11:65437671-65437699
exon
HITS-CLIP
DIRECT
LncBasev2
11:65436046-65436074
exon
HITS-CLIP
DIRECT
LncBasev2
11:65437782-65437810
exon
HITS-CLIP
DIRECT
LncBasev2
Skalsky Rebecca L. et al. 2012
LCLBACD3
IP
Tested Cell Line: LCLBACD3
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65426564-65426592
exon
PAR-CLIP
DIRECT
LncBasev2
11:65426564-65426592
exon
PAR-CLIP
DIRECT
LncBasev2
11:65426564-65426592
exon
PAR-CLIP
DIRECT
LncBasev2
11:65426564-65426592
exon
PAR-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65426564-65426592
exon
HITS-CLIP
DIRECT
LncBasev2
11:65439987-65440015
exon
HITS-CLIP
DIRECT
LncBasev2
11:65437671-65437699
exon
HITS-CLIP
DIRECT
LncBasev2
11:65439191-65439219
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426456-65426484
exon
HITS-CLIP
DIRECT
LncBasev2
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
11:65436046-65436074
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427216-65427244
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442612-65442640
exon
HITS-CLIP
DIRECT
LncBasev2
11:65432831-65432859
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426564-65426592
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442612-65442640
exon
HITS-CLIP
DIRECT
LncBasev2
11:65432831-65432859
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427216-65427244
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427216-65427244
exon
HITS-CLIP
DIRECT
LncBasev2
11:65439191-65439219
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65437782-65437810
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442612-65442640
exon
HITS-CLIP
DIRECT
LncBasev2
11:65439413-65439441
exon
HITS-CLIP
DIRECT
LncBasev2
11:65431853-65431881
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-17-5p
0.423
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: NR_028272.1
Biotype: lincRNA
Gene id: NR_028272.1 (gene)
Gene Name: NEAT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65426456-65426484
exon
HITS-CLIP
DIRECT
LncBasev2
NMD3P1
hsa-miR-17-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000439704
Biotype: processed_pseudogene
Gene id: ENSG00000226342
Gene Name: NMD3P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRNA.
Location
Region
Method
Result
Validation Type
Source
7:63909739-63909767
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by:
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