LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-17-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-819M15.1
hsa-miR-17-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000531301
Biotype: processed_pseudogene
Gene id: ENSG00000213252
Gene Name: RP11-819M15.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:106827791-106827819
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:106827791-106827819
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-81A1.6
hsa-miR-17-5p
0.926
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000618835
Biotype: sense_intronic
Gene id: ENSG00000278600
Gene Name: RP11-81A1.6
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
15:79920912-79920940
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-909M7.3
hsa-miR-17-5p
0.916
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: NR_110178.1
Biotype: lincRNA
Gene id: NR_110178.1 (gene)
Gene Name: RP11-909M7.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:100985641-100985669
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-98D18.17
hsa-miR-17-5p
0.475
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000601909
Biotype: lincRNA
Gene id: ENSG00000269489
Gene Name: RP11-98D18.17
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
1:151798120-151798148
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-309I22.2
hsa-miR-17-5p
0.865
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HMSC
IP
Tested Cell Line: HMSC
Category: Stem/Progenitor
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:32862963-32862991
exon
HITS-CLIP
DIRECT
LncBasev2
RP13-514E23.1
hsa-miR-17-5p
0.509
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000564854
Biotype: sense_overlapping
Gene id: ENSG00000261496
Gene Name: RP13-514E23.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:86013141-86013169
exon
HITS-CLIP
DIRECT
LncBasev2
RP13-75G22.1
hsa-miR-17-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000448218
Biotype: processed_pseudogene
Gene id: ENSG00000237752
Gene Name: RP13-75G22.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
X:97907415-97907443
exon
HITS-CLIP
DIRECT
LncBasev2
RP13-88F20.1
hsa-miR-17-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000441188
Biotype: processed_pseudogene
Gene id: ENSG00000234130
Gene Name: RP13-88F20.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:93223832-93223871
exon
HITS-CLIP
DIRECT
LncBasev2
RP3-468B3.2
hsa-miR-17-5p
0.622
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000451317
Biotype: lincRNA
Gene id: ENSG00000233183
Gene Name: RP3-468B3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:33926311-33926339
exon
HITS-CLIP
DIRECT
LncBasev2
RP3-514P16.1
hsa-miR-17-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000392722
Biotype: processed_pseudogene
Gene id: ENSG00000237682
Gene Name: RP3-514P16.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:101538032-101538060
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-725G10.4
hsa-miR-17-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000450065
Biotype: processed_pseudogene
Gene id: ENSG00000233028
Gene Name: RP4-725G10.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:56175840-56175868
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-814D15.2
hsa-miR-17-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000429552
Biotype: processed_pseudogene
Gene id: ENSG00000225224
Gene Name: RP4-814D15.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:157192743-157192771
exon
HITS-CLIP
DIRECT
LncBasev2
RP5-1186N24.3
hsa-miR-17-5p
0.682
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000499525
Biotype: antisense
Gene id: ENSG00000246350
Gene Name: RP5-1186N24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
6:28589379-28589414
exon
HITS-CLIP
DIRECT
LncBasev2
6:28589379-28589414
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:28589379-28589414
exon
HITS-CLIP
DIRECT
LncBasev2
RP5-890O3.9
hsa-miR-17-5p
0.737
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000444968
Biotype: sense_intronic
Gene id: ENSG00000240731
Gene Name: RP5-890O3.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:1317760-1317788
exon
HITS-CLIP
DIRECT
LncBasev2
RP5-935K16.1
hsa-miR-17-5p
0.435
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000602909
Biotype: lincRNA
Gene id: ENSG00000270081
Gene Name: RP5-935K16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:127845634-127845662
exon
HITS-CLIP
DIRECT
LncBasev2
RP6-24A23.7
hsa-miR-17-5p
0.656
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000564206
Biotype: sense_overlapping
Gene id: ENSG00000261409
Gene Name: RP6-24A23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
X:108720042-108720070
exon
HITS-CLIP
DIRECT
LncBasev2
X:108720565-108720593
exon
HITS-CLIP
DIRECT
LncBasev2
X:108721628-108721656
exon
HITS-CLIP
DIRECT
LncBasev2
X:108720565-108720593
exon
HITS-CLIP
DIRECT
LncBasev2
Hafner M. et al. 2010
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:108720565-108720593
exon
PAR-CLIP
DIRECT
LncBasev2
RPA2P3
hsa-miR-17-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000533268
Biotype: processed_pseudogene
Gene id: ENSG00000255547
Gene Name: RPA2P3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
11:100337001-100337029
exon
HITS-CLIP
DIRECT
LncBasev2
RPL39P5
hsa-miR-17-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000273411
Biotype: processed_transcript
Gene id: ENSG00000214289
Gene Name: RPL39P5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:134356421-134356449
exon
HITS-CLIP
DIRECT
LncBasev2
RPL4P4
hsa-miR-17-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000422486
Biotype: processed_pseudogene
Gene id: ENSG00000229638
Gene Name: RPL4P4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:185417871-185417899
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:185417871-185417899
exon
HITS-CLIP
DIRECT
LncBasev2
SBF2-AS1
hsa-miR-17-5p
0.425
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000498905
Biotype: antisense
Gene id: ENSG00000246273
Gene Name: SBF2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:9809016-9809044
exon
HITS-CLIP
DIRECT
LncBasev2
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