LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
LINC01405
hsa-miR-15a-5p
0.448
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000553177
Biotype: lincRNA
Gene id: ENSG00000185847
Gene Name: LINC01405
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
12:110958002-110958030
exon
HITS-CLIP
DIRECT
LncBasev2
LINC01433
hsa-miR-15a-5p
0.546
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000419003
Biotype: antisense
Gene id: ENSG00000230176
Gene Name: LINC01433
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:4193210-4193238
exon
HITS-CLIP
DIRECT
LncBasev2
LL22NC03-N27C7.1
hsa-miR-15a-5p
0.647
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000602816
Biotype: lincRNA
Gene id: ENSG00000270041
Gene Name: LL22NC03-N27C7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:23739236-23739264
exon
HITS-CLIP
DIRECT
LncBasev2
LLNLF-187D8.1
hsa-miR-15a-5p
0.564
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: ENST00000617053
Biotype: lincRNA
Gene id: ENSG00000277531
Gene Name: LLNLF-187D8.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
19:46425166-46425194
exon
HITS-CLIP
DIRECT
LncBasev2
LOC100507472
hsa-miR-15a-5p
0.477
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: NR_045387.1
Biotype: sense
Gene id: NR_045387.1 (gene)
Gene Name: LOC100507472
UCSC graphic: -
Expression: -

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
15:101309104-101309132
exon
HITS-CLIP
DIRECT
LncBasev2
LOC645513
hsa-miR-15a-5p
0.578
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: NR_037630.1
Biotype: antisense
Gene id: NR_037630.1 (gene)
Gene Name: LOC645513
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:119460749-119460777
exon
HITS-CLIP
DIRECT
LncBasev2
LOC730101
hsa-miR-15a-5p
0.431
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: NR_024403.1
Biotype: lincRNA
Gene id: NR_024403.1 (gene)
Gene Name: LOC730101
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:52668207-52668235
exon
PAR-CLIP
DIRECT
LncBasev2
LOC90246
hsa-miR-15a-5p
0.779
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: NR_026954.1
Biotype: lincRNA
Gene id: NR_026954.1 (gene)
Gene Name: LOC90246
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
3:128509774-128509802
exon
HITS-CLIP
DIRECT
LncBasev2
LRRC37BP1
hsa-miR-15a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000417404
Biotype: processed_transcript
Gene id: ENSG00000250462
Gene Name: LRRC37BP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:30635049-30635077
exon
HITS-CLIP
DIRECT
LncBasev2
17:30632576-30632604
exon
HITS-CLIP
DIRECT
LncBasev2
LY86-AS1
hsa-miR-15a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000429345
Biotype: antisense
Gene id: ENSG00000216863
Gene Name: LY86-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:6346585-6346613
exon
HITS-CLIP
DIRECT
LncBasev2
MALAT1
hsa-miR-15a-5p
0.887
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
11:65505911-65505939
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503521-65503549
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504383-65504411
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501621-65501649
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501652-65501680
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501621-65501649
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503521-65503549
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501652-65501680
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504383-65504411
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503521-65503549
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505911-65505939
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504383-65504411
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501621-65501649
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501652-65501680
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501652-65501680
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501621-65501649
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504383-65504411
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501652-65501680
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505911-65505939
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504383-65504411
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503521-65503549
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501621-65501649
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65501621-65501649
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501652-65501680
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504383-65504411
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505911-65505939
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503521-65503549
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503521-65503549
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505911-65505939
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504383-65504411
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503521-65503549
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504383-65504411
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65504383-65504411
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501621-65501649
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501652-65501680
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503521-65503549
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505911-65505939
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505911-65505939
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501652-65501680
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504383-65504411
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503521-65503549
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501621-65501649
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65503521-65503549
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501652-65501680
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501621-65501649
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504383-65504411
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505911-65505939
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505911-65505939
exon
HITS-CLIP
DIRECT
LncBasev2
Sebastian Memczak et al. 2013
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65504383-65504411
exon
PAR-CLIP
DIRECT
LncBasev2
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65504383-65504411
exon
PAR-CLIP
DIRECT
LncBasev2
11:65504383-65504411
exon
PAR-CLIP
DIRECT
LncBasev2
Inna Lipchina et al. 2011
Embryo
ESC
IP
Tested Cell Line: ESC
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65504383-65504411
exon
PAR-CLIP
DIRECT
LncBasev2
Skalsky Rebecca L. et al. 2012
LCLBAC
IP
Tested Cell Line: LCLBAC
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65504383-65504411
exon
PAR-CLIP
DIRECT
LncBasev2
Kishore S et al. 2011
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65504383-65504411
exon
PAR-CLIP
DIRECT
LncBasev2
Hafner M. et al. 2010
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65504383-65504411
exon
PAR-CLIP
DIRECT
LncBasev2
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRN.
Location
Region
Method
Result
Validation Type
Source
11:65504383-65504411
exon
HITS-CLIP
DIRECT
LncBasev2
MCM3AP-AS1
hsa-miR-15a-5p
0.937
mTTBlnPmP
IP

Gene Details
Chromosome: 21
Transcript: ENST00000414659
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
21:46251546-46251574
exon
HITS-CLIP
DIRECT
LncBasev2
MCM3AP-AS1
hsa-miR-15a-5p
0.958
mTTBlnPmP
IP

Gene Details
Chromosome: 21
Transcript: NR_002776.3
Biotype: antisense
Gene id: NR_002776.3 (gene)
Gene Name: MCM3AP-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
21:46251546-46251574
exon
HITS-CLIP
DIRECT
LncBasev2
MEG3
hsa-miR-15a-5p
0.451
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000455531
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:100835445-100835473
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:100835445-100835473
exon
HITS-CLIP
DIRECT
LncBasev2
MGC16025
hsa-miR-15a-5p
0.776
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: NR_026664.1
Biotype: sense
Gene id: NR_026664.1 (gene)
Gene Name: MGC16025
UCSC graphic: -
Expression: -

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:239195273-239195301
exon
HITS-CLIP
DIRECT
LncBasev2
MIA-RAB4B
hsa-miR-15a-5p
0.835
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: NR_037775.1
Biotype: sense
Gene id: NR_037775.1 (gene)
Gene Name: MIA-RAB4B
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
19:40796843-40796871
exon
HITS-CLIP
DIRECT
LncBasev2
19:40796725-40796756
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
19:40796725-40796756
exon
HITS-CLIP
DIRECT
LncBasev2
MIR4500HG
hsa-miR-15a-5p
0.690
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000441617
Biotype: lincRNA
Gene id: ENSG00000228824
Gene Name: MIR4500HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:87671108-87671136
exon
HITS-CLIP
DIRECT
LncBasev2
MRPL20P1
hsa-miR-15a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 21
Transcript: ENST00000400819
Biotype: processed_pseudogene
Gene id: ENSG00000215734
Gene Name: MRPL20P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
21:36994829-36994857
exon
HITS-CLIP
DIRECT
LncBasev2
MRPL3P1
hsa-miR-15a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000400109
Biotype: processed_pseudogene
Gene id: ENSG00000215349
Gene Name: MRPL3P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Hafner M. et al. 2010
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:19305047-19305075
exon
PAR-CLIP
DIRECT
LncBasev2
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:19305047-19305075
exon
PAR-CLIP
DIRECT
LncBasev2
Skalsky Rebecca L. et al. 2012
LCL35
IP
Tested Cell Line: LCL35
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:19305047-19305075
exon
PAR-CLIP
DIRECT
LncBasev2
13:19305047-19305075
exon
PAR-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:19305047-19305075
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:19305047-19305075
exon
HITS-CLIP
DIRECT
LncBasev2
MRPS31P5
hsa-miR-15a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000416599
Biotype: processed_transcript
Gene id: ENSG00000243406
Gene Name: MRPS31P5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:52190040-52190068
exon
HITS-CLIP
DIRECT
LncBasev2
13:52190040-52190071
exon
HITS-CLIP
DIRECT
LncBasev2
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