LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
MT1XP1
hsa-miR-15a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000421314
Biotype: processed_pseudogene
Gene id: ENSG00000233929
Gene Name: MT1XP1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:16241295-16241323
exon
HITS-CLIP
DIRECT
LncBasev2
MT2P1
hsa-miR-15a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000262499
Biotype: processed_pseudogene
Gene id: ENSG00000162840
Gene Name: MT2P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:68376395-68376426
exon
HITS-CLIP
DIRECT
LncBasev2
4:68376395-68376426
exon
HITS-CLIP
DIRECT
LncBasev2
4:68376395-68376426
exon
HITS-CLIP
DIRECT
LncBasev2
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRNA.
Location
Region
Method
Result
Validation Type
Source
4:68376395-68376426
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:68376398-68376426
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:68376395-68376426
exon
HITS-CLIP
DIRECT
LncBasev2
MYO15B
hsa-miR-15a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000612587
Biotype: processed_transcript
Gene id: ENSG00000266714
Gene Name: MYO15B
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:75620820-75620848
exon
HITS-CLIP
DIRECT
LncBasev2
NCBP2-AS2
hsa-miR-15a-5p
0.708
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000602845
Biotype: lincRNA
Gene id: ENSG00000270170
Gene Name: NCBP2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:196943318-196943346
exon
HITS-CLIP
DIRECT
LncBasev2
3:196943318-196943346
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-15a-5p
0.670
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65439883-65439911
exon
HITS-CLIP
DIRECT
LncBasev2
11:65436024-65436052
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423558-65423586
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434329-65434357
exon
HITS-CLIP
DIRECT
LncBasev2
11:65435668-65435696
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443752-65443780
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423558-65423586
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423830-65423858
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442208-65442239
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443271-65443299
exon
HITS-CLIP
DIRECT
LncBasev2
11:65439111-65439164
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427810-65427838
exon
HITS-CLIP
DIRECT
LncBasev2
11:65435668-65435696
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443888-65443916
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427810-65427838
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444029-65444057
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443271-65443299
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444029-65444057
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443271-65443299
exon
HITS-CLIP
DIRECT
LncBasev2
11:65441160-65441188
exon
HITS-CLIP
DIRECT
LncBasev2
11:65439111-65439164
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443888-65443916
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442208-65442239
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427810-65427838
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434540-65434568
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434813-65434841
exon
HITS-CLIP
DIRECT
LncBasev2
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
11:65427810-65427838
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443271-65443299
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442208-65442239
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423558-65423586
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423830-65423858
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444029-65444057
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443752-65443780
exon
HITS-CLIP
DIRECT
LncBasev2
11:65435668-65435696
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423558-65423586
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443271-65443299
exon
HITS-CLIP
DIRECT
LncBasev2
11:65436024-65436052
exon
HITS-CLIP
DIRECT
LncBasev2
11:65435668-65435696
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444029-65444057
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434329-65434357
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427810-65427838
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423830-65423858
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434329-65434357
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423558-65423586
exon
HITS-CLIP
DIRECT
LncBasev2
11:65441160-65441188
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442208-65442239
exon
HITS-CLIP
DIRECT
LncBasev2
11:65439111-65439164
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442208-65442236
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443271-65443299
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444029-65444057
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443888-65443916
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427810-65427838
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443752-65443780
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443271-65443299
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442208-65442239
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423558-65423586
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427810-65427838
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442208-65442236
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423830-65423858
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423830-65423858
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443888-65443916
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65434540-65434568
exon
HITS-CLIP
DIRECT
LncBasev2
11:65439111-65439164
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442211-65442239
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65439883-65439911
exon
HITS-CLIP
DIRECT
LncBasev2
11:65435668-65435696
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443752-65443780
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423558-65423586
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65442208-65442239
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443271-65443299
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65423558-65423586
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443271-65443299
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427810-65427838
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434813-65434841
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442208-65442239
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434540-65434568
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443752-65443780
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442208-65442239
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444029-65444057
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-15a-5p
0.373
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: NR_028272.1
Biotype: lincRNA
Gene id: NR_028272.1 (gene)
Gene Name: NEAT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
11:65423558-65423586
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423830-65423858
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423830-65423858
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423830-65423858
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423558-65423586
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423558-65423586
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423830-65423858
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423558-65423586
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65423558-65423586
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423830-65423858
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423558-65423586
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65423558-65423586
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65423558-65423586
exon
HITS-CLIP
DIRECT
LncBasev2
NPM1P26
hsa-miR-15a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000426339
Biotype: processed_pseudogene
Gene id: ENSG00000235677
Gene Name: NPM1P26
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:96560633-96560661
exon
HITS-CLIP
DIRECT
LncBasev2
NPM1P27
hsa-miR-15a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000502784
Biotype: processed_pseudogene
Gene id: ENSG00000249353
Gene Name: NPM1P27
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:93683238-93683266
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:93683238-93683266
exon
HITS-CLIP
DIRECT
LncBasev2
NR2F1-AS1
hsa-miR-15a-5p
0.480
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000607797
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:93411062-93411090
exon
HITS-CLIP
DIRECT
LncBasev2
NS3BP
hsa-miR-15a-5p
0.441
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: NR_046316.1
Biotype: lincRNA
Gene id: NR_046316.1 (gene)
Gene Name: NS3BP
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
11:779942-779970
exon
HITS-CLIP
DIRECT
LncBasev2
11:779807-779835
exon
HITS-CLIP
DIRECT
LncBasev2
OIP5-AS1
hsa-miR-15a-5p
0.519
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000500949
Biotype: antisense
Gene id: ENSG00000247556
Gene Name: OIP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:41301297-41301325
exon
HITS-CLIP
DIRECT
LncBasev2
15:41304640-41304668
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:41303638-41303666
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:41303638-41303666
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:41304640-41304668
exon
HITS-CLIP
DIRECT
LncBasev2
PABPC1P4
hsa-miR-15a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000539977
Biotype: processed_pseudogene
Gene id: ENSG00000255642
Gene Name: PABPC1P4
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:63823357-63823385
exon
HITS-CLIP
DIRECT
LncBasev2
PART1
hsa-miR-15a-5p
0.463
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000504876
Biotype: lincRNA
Gene id: ENSG00000152931
Gene Name: PART1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:60523894-60523922
exon
HITS-CLIP
DIRECT
LncBasev2
PKD1P6
hsa-miR-15a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000343738
Biotype: transcribed_unprocessed_pseudogene
Gene id: ENSG00000250251
Gene Name: PKD1P6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:15133327-15133355
exon
HITS-CLIP
DIRECT
LncBasev2
PKI55
hsa-miR-15a-5p
0.558
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000562038
Biotype: lincRNA
Gene id: ENSG00000260804
Gene Name: PKI55
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:216217211-216217239
exon
HITS-CLIP
DIRECT
LncBasev2
POM121B
hsa-miR-15a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000380760
Biotype: unprocessed_pseudogene
Gene id: ENSG00000205578
Gene Name: POM121B
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:73295771-73295799
exon
PAR-CLIP
DIRECT
LncBasev2
PPP1R14BP3
hsa-miR-15a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000509033
Biotype: processed_pseudogene
Gene id: ENSG00000179967
Gene Name: PPP1R14BP3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:139115023-139115051
exon
HITS-CLIP
DIRECT
LncBasev2
PSMD5-AS1
hsa-miR-15a-5p
0.753
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000447891
Biotype: antisense
Gene id: ENSG00000226752
Gene Name: PSMD5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:120854246-120854274
exon
HITS-CLIP
DIRECT
LncBasev2
PSMD5-AS1
hsa-miR-15a-5p
0.583
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000458394
Biotype: retained_intron
Gene id: ENSG00000226752
Gene Name: PSMD5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:120844328-120844356
exon
PAR-CLIP
DIRECT
LncBasev2
PSMG3-AS1
hsa-miR-15a-5p
0.502
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000437621
Biotype: lincRNA
Gene id: ENSG00000230487
Gene Name: PSMG3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:1585363-1585391
exon
HITS-CLIP
DIRECT
LncBasev2
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