LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
NBEAP1
hsa-miR-146a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000556948
Biotype: retained_intron
Gene id: ENSG00000258590
Gene Name: NBEAP1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:20665023-20665051
exon
PAR-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-146a-5p
0.815
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
11:65444373-65444401
exon
HITS-CLIP
DIRECT
LncBasev2
11:65430416-65430444
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444796-65444824
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425272-65425300
exon
HITS-CLIP
DIRECT
LncBasev2
11:65445193-65445221
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444796-65444824
exon
HITS-CLIP
DIRECT
LncBasev2
11:65430416-65430444
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442217-65442245
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424507-65424535
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424089-65424117
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444373-65444401
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424507-65424535
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424089-65424117
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425272-65425300
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424089-65424117
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444373-65444401
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425272-65425300
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442217-65442245
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424507-65424535
exon
HITS-CLIP
DIRECT
LncBasev2
11:65430416-65430444
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425272-65425300
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442217-65442245
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424507-65424535
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444373-65444401
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424089-65424117
exon
HITS-CLIP
DIRECT
LncBasev2
11:65430416-65430444
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65432254-65432282
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442217-65442245
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424089-65424117
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444796-65444824
exon
HITS-CLIP
DIRECT
LncBasev2
11:65430416-65430444
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442217-65442245
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
MDAMB231
IP
Tested Cell Line: MDAMB231
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65424507-65424535
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-146a-5p
0.476
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: NR_028272.1
Biotype: lincRNA
Gene id: NR_028272.1 (gene)
Gene Name: NEAT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
11:65424507-65424535
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424089-65424117
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425272-65425300
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424507-65424535
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424089-65424117
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425272-65425300
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424507-65424535
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424089-65424117
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424507-65424535
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425272-65425300
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424089-65424117
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425272-65425300
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
MDAMB231
IP
Tested Cell Line: MDAMB231
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65424507-65424535
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65424089-65424117
exon
HITS-CLIP
DIRECT
LncBasev2
P2RX5-TAX1BP3
hsa-miR-146a-5p
0.377
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: NR_037928.1
Biotype: sense
Gene id: NR_037928.1 (gene)
Gene Name: P2RX5-TAX1BP3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Publication
Tissue
Cell Type
Methods
Skalsky Rebecca L. et al. 2012
LCLBACD1
IP
Tested Cell Line: LCLBACD1
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:3695858-3695886
exon
PAR-CLIP
DIRECT
LncBasev2
PA2G4P4
hsa-miR-146a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000473864
Biotype: processed_pseudogene
Gene id: ENSG00000230457
Gene Name: PA2G4P4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:156809808-156809836
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-282K24.3
hsa-miR-146a-5p
0.473
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000501211
Biotype: sense_intronic
Gene id: ENSG00000253284
Gene Name: RP11-282K24.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
12:19153945-19153973
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-283I3.6
hsa-miR-146a-5p
0.536
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000570140
Biotype: sense_overlapping
Gene id: ENSG00000261799
Gene Name: RP11-283I3.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
12:276954-276982
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-297D21.4
hsa-miR-146a-5p
0.374
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000602476
Biotype: antisense
Gene id: ENSG00000270049
Gene Name: RP11-297D21.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
16:67487044-67487072
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-307A17.2
hsa-miR-146a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000603371
Biotype: processed_pseudogene
Gene id: ENSG00000271519
Gene Name: RP11-307A17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant

miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
X:35868568-35868596
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-309L24.4
hsa-miR-146a-5p
0.552
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000609480
Biotype: lincRNA
Gene id: ENSG00000272899
Gene Name: RP11-309L24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant

miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:128871822-128871850
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-317J19.1
hsa-miR-146a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000524610
Biotype: antisense
Gene id: ENSG00000254733
Gene Name: RP11-317J19.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
11:86622807-86622835
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-334C17.5
hsa-miR-146a-5p
0.399
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000570309
Biotype: antisense
Gene id: ENSG00000262580
Gene Name: RP11-334C17.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:80201227-80201255
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-379K17.4
hsa-miR-146a-5p
0.778
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000469301
Biotype: antisense
Gene id: ENSG00000239219
Gene Name: RP11-379K17.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
3:169954372-169954400
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-395G23.3
hsa-miR-146a-5p
0.408
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000521369
Biotype: lincRNA
Gene id: ENSG00000254615
Gene Name: RP11-395G23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:106272055-106272083
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-403P17.4
hsa-miR-146a-5p
0.385
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000563151
Biotype: lincRNA
Gene id: ENSG00000261519
Gene Name: RP11-403P17.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:66550516-66550544
exon
HITS-CLIP
DIRECT
LncBasev2
Skalsky Rebecca L. et al. 2012
EF3DAGO2
IP
Tested Cell Line: EF3DAGO2
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:66550516-66550544
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-473N11.2
hsa-miR-146a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000537175
Biotype: processed_pseudogene
Gene id: ENSG00000256238
Gene Name: RP11-473N11.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:16401168-16401196
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-54O7.3
hsa-miR-146a-5p
0.438
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000609207
Biotype: retained_intron
Gene id: ENSG00000223764
Gene Name: RP11-54O7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
1:919266-919294
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-553L6.5
hsa-miR-146a-5p
0.759
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000570269
Biotype: lincRNA
Gene id: ENSG00000259976
Gene Name: RP11-553L6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:114314893-114314921
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-56B16.1
hsa-miR-146a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000560291
Biotype: processed_pseudogene
Gene id: ENSG00000259632
Gene Name: RP11-56B16.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:51860170-51860198
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-611O2.3
hsa-miR-146a-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000537570
Biotype: processed_pseudogene
Gene id: ENSG00000256664
Gene Name: RP11-611O2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:68842026-68842054
exon
HITS-CLIP
DIRECT
LncBasev2
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
12:68842026-68842054
exon
HITS-CLIP
DIRECT
LncBasev2
12:68842026-68842054
exon
HITS-CLIP
DIRECT
LncBasev2
12:68842026-68842054
exon
HITS-CLIP
DIRECT
LncBasev2
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