LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-760D2.7
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000435487
Biotype: processed_pseudogene
Gene id: ENSG00000213650
Gene Name: RP11-760D2.7
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:56568015-56568043
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-77H9.2
hsa-miR-145-5p
0.537
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000565934
Biotype: antisense
Gene id: ENSG00000260276
Gene Name: RP11-77H9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:8848875-8848903
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-79P5.10
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000327891
Biotype: processed_pseudogene
Gene id: ENSG00000255883
Gene Name: RP11-79P5.10
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:73508939-73508967
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-819C21.1
hsa-miR-145-5p
0.538
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000561746
Biotype: lincRNA
Gene id: ENSG00000261098
Gene Name: RP11-819C21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:107315522-107315550
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-867G2.8
hsa-miR-145-5p
0.513
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000536540
Biotype: antisense
Gene id: ENSG00000255929
Gene Name: RP11-867G2.8
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:94679412-94679440
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-884K10.7
hsa-miR-145-5p
0.507
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000607783
Biotype: antisense
Gene id: ENSG00000271976
Gene Name: RP11-884K10.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:53860448-53860476
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-88H12.2
hsa-miR-145-5p
0.609
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000602316
Biotype: sense_intronic
Gene id: ENSG00000270059
Gene Name: RP11-88H12.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:65359299-65359327
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-97O12.7
hsa-miR-145-5p
0.644
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000561140
Biotype: processed_transcript
Gene id: ENSG00000173867
Gene Name: RP11-97O12.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:88459729-88459757
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-228H13.1
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000600955
Biotype: processed_pseudogene
Gene id: ENSG00000227311
Gene Name: RP1-228H13.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:40333372-40333400
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-239B22.5
hsa-miR-145-5p
0.660
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000568280
Biotype: antisense
Gene id: ENSG00000260196
Gene Name: RP1-239B22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:17381345-17381373
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-309I22.2
hsa-miR-145-5p
0.918
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:32860247-32860275
exon
HITS-CLIP
DIRECT
LncBasev2
RP13-258O15.1
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000443413
Biotype: processed_pseudogene
Gene id: ENSG00000225912
Gene Name: RP13-258O15.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:92676621-92676649
exon
HITS-CLIP
DIRECT
LncBasev2
RP13-514E23.1
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000564854
Biotype: sense_overlapping
Gene id: ENSG00000261496
Gene Name: RP13-514E23.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:86012871-86012899
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-60O19.1
hsa-miR-145-5p
0.432
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000607090
Biotype: lincRNA
Gene id: ENSG00000235142
Gene Name: RP1-60O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:106774482-106774510
exon
HITS-CLIP
DIRECT
LncBasev2
RP3-368A4.5
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000603037
Biotype: sense_intronic
Gene id: ENSG00000271430
Gene Name: RP3-368A4.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:74203165-74203193
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-604A21.1
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000425821
Biotype: processed_pseudogene
Gene id: ENSG00000225616
Gene Name: RP4-604A21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:28982562-28982590
exon
HITS-CLIP
DIRECT
LncBasev2
RP5-1021I20.5
hsa-miR-145-5p
0.687
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000555916
Biotype: antisense
Gene id: ENSG00000258891
Gene Name: RP5-1021I20.5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:73937656-73937684
exon
HITS-CLIP
DIRECT
LncBasev2
RP5-864K19.4
hsa-miR-145-5p
0.437
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000433671
Biotype: antisense
Gene id: ENSG00000228436
Gene Name: RP5-864K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:38860149-38860177
exon
HITS-CLIP
DIRECT
LncBasev2
RP5-935K16.1
hsa-miR-145-5p
0.421
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000602909
Biotype: lincRNA
Gene id: ENSG00000270081
Gene Name: RP5-935K16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:127844543-127844571
exon
HITS-CLIP
DIRECT
LncBasev2
RPL10P3
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000431607
Biotype: processed_pseudogene
Gene id: ENSG00000230734
Gene Name: RPL10P3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:117180726-117180754
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:117180726-117180754
exon
HITS-CLIP
DIRECT
LncBasev2
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