LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-156E6.1
hsa-miR-145-5p
0.697
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000560400
Biotype: sense_overlapping
Gene id: ENSG00000259623
Gene Name: RP11-156E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:41850526-41850554
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-181C21.4
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000427577
Biotype: processed_pseudogene
Gene id: ENSG00000219201
Gene Name: RP11-181C21.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:77811515-77811543
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-214K3.20
hsa-miR-145-5p
0.396
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000602601
Biotype: sense_intronic
Gene id: ENSG00000269938
Gene Name: RP11-214K3.20
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:123968294-123968322
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-215G15.5
hsa-miR-145-5p
0.830
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000607560
Biotype: lincRNA
Gene id: ENSG00000272016
Gene Name: RP11-215G15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Skalsky Rebecca L. et al. 2012
EF3DAGO2
IP
Tested Cell Line: EF3DAGO2
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:10657239-10657267
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-255H23.2
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: ENST00000472297
Biotype: transcribed_unprocessed_pseudogene
Gene id: ENSG00000233836
Gene Name: RP11-255H23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
19:23832680-23832708
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-258C19.7
hsa-miR-145-5p
0.527
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000603385
Biotype: lincRNA
Gene id: ENSG00000270189
Gene Name: RP11-258C19.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:53170552-53170580
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-286B14.1
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000411798
Biotype: lincRNA
Gene id: ENSG00000228971
Gene Name: RP11-286B14.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:95510322-95510350
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-28F1.2
hsa-miR-145-5p
0.847
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000588307
Biotype: sense_intronic
Gene id: ENSG00000267701
Gene Name: RP11-28F1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
18:63314342-63314370
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-298J20.4
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000508096
Biotype: sense_overlapping
Gene id: ENSG00000249456
Gene Name: RP11-298J20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:124942521-124942549
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-305E6.4
hsa-miR-145-5p
0.498
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000561542
Biotype: sense_overlapping
Gene id: ENSG00000259994
Gene Name: RP11-305E6.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:30304291-30304319
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-312J18.5
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000425270
Biotype: processed_pseudogene
Gene id: ENSG00000213080
Gene Name: RP11-312J18.5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:160895167-160895195
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-328K15.1
hsa-miR-145-5p
0.378
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000445647
Biotype: lincRNA
Gene id: ENSG00000234952
Gene Name: RP11-328K15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:117736235-117736263
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-337C18.8
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000607149
Biotype: antisense
Gene id: ENSG00000237188
Gene Name: RP11-337C18.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:147210561-147210589
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-347H15.2
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000525487
Biotype: processed_pseudogene
Gene id: ENSG00000255500
Gene Name: RP11-347H15.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:50268543-50268571
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:50268543-50268571
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-348P10.2
hsa-miR-145-5p
0.401
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000606008
Biotype: lincRNA
Gene id: ENSG00000272077
Gene Name: RP11-348P10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:44667815-44667843
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-365D23.4
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000432577
Biotype: processed_pseudogene
Gene id: ENSG00000213036
Gene Name: RP11-365D23.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:214483064-214483092
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-379I19.1
hsa-miR-145-5p
0.461
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000521456
Biotype: lincRNA
Gene id: ENSG00000253260
Gene Name: RP11-379I19.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:59593652-59593680
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-386I14.3
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000448345
Biotype: processed_pseudogene
Gene id: ENSG00000213560
Gene Name: RP11-386I14.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:78091616-78091644
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-395B7.7
hsa-miR-145-5p
0.841
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000564977
Biotype: sense_overlapping
Gene id: ENSG00000260336
Gene Name: RP11-395B7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:101095740-101095768
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-399C16.3
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000624879
Biotype: sense_intronic
Gene id: ENSG00000279623
Gene Name: RP11-399C16.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:21865703-21865731
exon
HITS-CLIP
DIRECT
LncBasev2
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