LncBase Experimental v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
XLOC_013093
hsa-miR-145-5p
0.463
mTTBlnPmP
IP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027051
Biotype: transcript isomorph
Gene id: XLOC_013093
Gene Name: XLOC_013093
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr19:44196436-44196464
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_013363
hsa-miR-145-5p
0.493
mTTBlnPmP
IP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026818
Biotype: transcript isomorph
Gene id: XLOC_013363
Gene Name: XLOC_013363
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr19:46059651-46059679
exon
HITS-CLIP
DIRECT
LncBasev2
YWHAEP1
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000453697
Biotype: processed_pseudogene
Gene id: ENSG00000232727
Gene Name: YWHAEP1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:64434151-64434179
exon
HITS-CLIP
DIRECT
LncBasev2
YWHAEP5
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000431545
Biotype: processed_pseudogene
Gene id: ENSG00000234645
Gene Name: YWHAEP5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:138288479-138288507
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:138288479-138288507
exon
HITS-CLIP
DIRECT
LncBasev2
ZNF204P
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000416749
Biotype: processed_pseudogene
Gene id: ENSG00000204789
Gene Name: ZNF204P
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:27358912-27358940
exon
HITS-CLIP
DIRECT
LncBasev2
6:27357986-27358014
exon
HITS-CLIP
DIRECT
LncBasev2
ZNF271
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000399070
Biotype: processed_transcript
Gene id: ENSG00000257267
Gene Name: ZNF271
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
18:35309971-35309999
exon
HITS-CLIP
DIRECT
LncBasev2
ZNF37BP
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000452075
Biotype: processed_transcript
Gene id: ENSG00000234420
Gene Name: ZNF37BP
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:42515616-42515644
exon
HITS-CLIP
DIRECT
LncBasev2
10:42523265-42523293
exon
HITS-CLIP
DIRECT
LncBasev2
ZNF840
hsa-miR-145-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000504759
Biotype: unprocessed_pseudogene
Gene id: ENSG00000184617
Gene Name: ZNF840
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:46492401-46492429
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by:
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