LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-132-3p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
LOC100506990
hsa-miR-132-3p
0.580
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: NR_040092.1
Biotype: lincRNA
Gene id: NR_040092.1 (gene)
Gene Name: LOC100506990
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:12565983-12566011
exon
HITS-CLIP
DIRECT
LncBasev2
LYPLA1P3
hsa-miR-132-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000402650
Biotype: processed_pseudogene
Gene id: ENSG00000218350
Gene Name: LYPLA1P3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:71165222-71165259
exon
HITS-CLIP
DIRECT
LncBasev2
MAGI2-AS3
hsa-miR-132-3p
0.582
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000452320
Biotype: retained_intron
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary

miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:79463388-79463416
exon
HITS-CLIP
DIRECT
LncBasev2
7:79463563-79463591
exon
HITS-CLIP
DIRECT
LncBasev2
7:79461424-79461452
exon
HITS-CLIP
DIRECT
LncBasev2
MALAT1
hsa-miR-132-3p
0.418
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
11:65504369-65504397
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505494-65505522
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501855-65501883
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503502-65503530
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505494-65505522
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504369-65504397
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501855-65501883
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504369-65504397
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503502-65503530
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505494-65505522
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501855-65501883
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504369-65504397
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503502-65503530
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501855-65501883
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504369-65504397
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505494-65505522
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503502-65503530
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505494-65505522
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501855-65501883
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503502-65503530
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65501855-65501883
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504369-65504397
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503502-65503530
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501855-65501883
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504369-65504397
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503502-65503530
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503502-65503530
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65501855-65501883
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504369-65504397
exon
HITS-CLIP
DIRECT
LncBasev2
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRN.
Location
Region
Method
Result
Validation Type
Source
11:65503502-65503530
exon
HITS-CLIP
DIRECT
LncBasev2
MCM3AP-AS1
hsa-miR-132-3p
0.432
mTTBlnPmP
IP

Gene Details
Chromosome: 21
Transcript: ENST00000414659
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:hippuristanol
Location
Region
Method
Result
Validation Type
Source
21:46251148-46251176
exon
HITS-CLIP
DIRECT
LncBasev2
21:46251148-46251176
exon
HITS-CLIP
DIRECT
LncBasev2
MCM3AP-AS1
hsa-miR-132-3p
0.446
mTTBlnPmP
IP

Gene Details
Chromosome: 21
Transcript: NR_002776.3
Biotype: antisense
Gene id: NR_002776.3 (gene)
Gene Name: MCM3AP-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:hippuristanol
Location
Region
Method
Result
Validation Type
Source
21:46251148-46251176
exon
HITS-CLIP
DIRECT
LncBasev2
21:46251148-46251176
exon
HITS-CLIP
DIRECT
LncBasev2
MEG3
hsa-miR-132-3p
0.404
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000522771
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:100849680-100849708
exon
HITS-CLIP
DIRECT
LncBasev2
MEG8
hsa-miR-132-3p
0.462
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000553465
Biotype: lincRNA
Gene id: ENSG00000258399
Gene Name: MEG8
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:100910212-100910240
exon
HITS-CLIP
DIRECT
LncBasev2
MIR124-2HG
hsa-miR-132-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000521441
Biotype: lincRNA
Gene id: ENSG00000254377
Gene Name: MIR124-2HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary

miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:64383368-64383396
exon
HITS-CLIP
DIRECT
LncBasev2
MIR17HG
hsa-miR-132-3p
0.779
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000582141
Biotype: retained_intron
Gene id: ENSG00000215417
Gene Name: MIR17HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:91351590-91351618
exon
HITS-CLIP
DIRECT
LncBasev2
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
13:91351590-91351618
exon
HITS-CLIP
DIRECT
LncBasev2
MIR4458HG
hsa-miR-132-3p
0.909
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000606459
Biotype: lincRNA
Gene id: ENSG00000247516
Gene Name: MIR4458HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:8461458-8461486
exon
HITS-CLIP
DIRECT
LncBasev2
MIR4500HG
hsa-miR-132-3p
0.489
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000441617
Biotype: lincRNA
Gene id: ENSG00000228824
Gene Name: MIR4500HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary

miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:87671089-87671117
exon
HITS-CLIP
DIRECT
LncBasev2
MIR600HG
hsa-miR-132-3p
0.449
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000449175
Biotype: sense_intronic
Gene id: ENSG00000236901
Gene Name: MIR600HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:123114069-123114097
exon
HITS-CLIP
DIRECT
LncBasev2
MTHFD2P7
hsa-miR-132-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000483867
Biotype: processed_pseudogene
Gene id: ENSG00000181260
Gene Name: MTHFD2P7
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:179465001-179465029
exon
HITS-CLIP
DIRECT
LncBasev2
MTND1P32
hsa-miR-132-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000433043
Biotype: processed_pseudogene
Gene id: ENSG00000232282
Gene Name: MTND1P32
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:102785808-102785836
exon
HITS-CLIP
DIRECT
LncBasev2
N4BP2L2-IT2
hsa-miR-132-3p
0.470
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: NR_026928.1
Biotype: sense
Gene id: NR_026928.1 (gene)
Gene Name: N4BP2L2-IT2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:32505878-32505906
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-132-3p
0.918
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
11:65427148-65427176
exon
HITS-CLIP
DIRECT
LncBasev2
11:65429216-65429244
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427148-65427176
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443783-65443811
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434189-65434217
exon
HITS-CLIP
DIRECT
LncBasev2
11:65435638-65435666
exon
HITS-CLIP
DIRECT
LncBasev2
11:65436267-65436295
exon
HITS-CLIP
DIRECT
LncBasev2
11:65430623-65430651
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427148-65427176
exon
HITS-CLIP
DIRECT
LncBasev2
11:65429216-65429244
exon
HITS-CLIP
DIRECT
LncBasev2
11:65430623-65430651
exon
HITS-CLIP
DIRECT
LncBasev2
11:65435638-65435666
exon
HITS-CLIP
DIRECT
LncBasev2
11:65436267-65436295
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427148-65427176
exon
HITS-CLIP
DIRECT
LncBasev2
11:65435638-65435666
exon
HITS-CLIP
DIRECT
LncBasev2
11:65436620-65436648
exon
HITS-CLIP
DIRECT
LncBasev2
11:65436267-65436295
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427148-65427176
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65443783-65443811
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434189-65434217
exon
HITS-CLIP
DIRECT
LncBasev2
11:65435638-65435666
exon
HITS-CLIP
DIRECT
LncBasev2
11:65439931-65439959
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426427-65426455
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443462-65443490
exon
HITS-CLIP
DIRECT
LncBasev2
11:65436620-65436648
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65427148-65427176
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434862-65434890
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434189-65434217
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434540-65434568
exon
HITS-CLIP
DIRECT
LncBasev2
11:65436267-65436295
exon
HITS-CLIP
DIRECT
LncBasev2
11:65436620-65436648
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443783-65443811
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434862-65434890
exon
HITS-CLIP
DIRECT
LncBasev2
11:65436267-65436295
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65435395-65435423
exon
HITS-CLIP
DIRECT
LncBasev2
11:65429216-65429244
exon
HITS-CLIP
DIRECT
LncBasev2
11:65436620-65436648
exon
HITS-CLIP
DIRECT
LncBasev2
11:65439931-65439959
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-132-3p
0.400
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: NR_028272.1
Biotype: lincRNA
Gene id: NR_028272.1 (gene)
Gene Name: NEAT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65426427-65426455
exon
HITS-CLIP
DIRECT
LncBasev2
NR2F1-AS1
hsa-miR-132-3p
0.668
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000607797
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
5:93570099-93570127
exon
HITS-CLIP
DIRECT
LncBasev2
NUDT16P1
hsa-miR-132-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000499077
Biotype: processed_transcript
Gene id: ENSG00000246082
Gene Name: NUDT16P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-132-3p
Sequence: uaacagucuacagccauggucg
MirBase ID: MIMAT0000426
Related Diseases:

Publication
Tissue
Cell Type
Methods
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRNA.
Location
Region
Method
Result
Validation Type
Source
3:131364739-131364767
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by:
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