LncBase Experimental v.2
Help
Download
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-125b-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-173P15.7
hsa-miR-125b-5p
0.488
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000542620
Biotype: antisense
Gene id: ENSG00000255946
Gene Name: RP11-173P15.7
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
12:120740488-120740516
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-178L8.8
hsa-miR-125b-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000602665
Biotype: antisense
Gene id: ENSG00000270082
Gene Name: RP11-178L8.8
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Hafner M. et al. 2010
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:87327573-87327601
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-197N18.2
hsa-miR-125b-5p
0.630
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000540866
Biotype: retained_intron
Gene id: ENSG00000256028
Gene Name: RP11-197N18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:122982711-122982739
exon
HITS-CLIP
DIRECT
LncBasev2
12:122982791-122982819
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-19G24.1
hsa-miR-125b-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000610837
Biotype: processed_pseudogene
Gene id: ENSG00000274308
Gene Name: RP11-19G24.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:37141169-37141197
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-215G15.5
hsa-miR-125b-5p
1.000
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000607560
Biotype: lincRNA
Gene id: ENSG00000272016
Gene Name: RP11-215G15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:10657556-10657584
exon
HITS-CLIP
DIRECT
LncBasev2
5:10654378-10654406
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-227G15.9
hsa-miR-125b-5p
0.795
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000584125
Biotype: lincRNA
Gene id: ENSG00000264083
Gene Name: RP11-227G15.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:32432785-32432813
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-244K5.6
hsa-miR-125b-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000421363
Biotype: processed_transcript
Gene id: ENSG00000216621
Gene Name: RP11-244K5.6
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
6:149936021-149936049
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-297M9.2
hsa-miR-125b-5p
0.685
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000562861
Biotype: lincRNA
Gene id: ENSG00000260432
Gene Name: RP11-297M9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:9756976-9757004
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-298I3.1
hsa-miR-125b-5p
0.588
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000548322
Biotype: antisense
Gene id: ENSG00000257285
Gene Name: RP11-298I3.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kishore S et al. 2011
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:22929676-22929704
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-29G8.3
hsa-miR-125b-5p
0.999
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000563635
Biotype: processed_transcript
Gene id: ENSG00000261553
Gene Name: RP11-29G8.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:75566714-75566742
exon
HITS-CLIP
DIRECT
LncBasev2
13:75805727-75805755
exon
HITS-CLIP
DIRECT
LncBasev2
13:75621820-75621848
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:75566714-75566742
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HMSC
IP
Tested Cell Line: HMSC
Category: Stem/Progenitor
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:75566714-75566742
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-319G6.1
hsa-miR-125b-5p
0.386
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000510068
Biotype: antisense
Gene id: ENSG00000248932
Gene Name: RP11-319G6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
3:139452155-139452183
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-331F4.4
hsa-miR-125b-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000498687
Biotype: retained_intron
Gene id: ENSG00000240338
Gene Name: RP11-331F4.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:75226742-75226770
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-362F19.1
hsa-miR-125b-5p
0.367
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000511213
Biotype: lincRNA
Gene id: ENSG00000248810
Gene Name: RP11-362F19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:141332458-141332486
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-383G10.5
hsa-miR-125b-5p
0.374
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000452599
Biotype: antisense
Gene id: ENSG00000225063
Gene Name: RP11-383G10.5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:205233978-205234006
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-395B7.7
hsa-miR-125b-5p
0.402
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000564977
Biotype: sense_overlapping
Gene id: ENSG00000260336
Gene Name: RP11-395B7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:101094812-101094840
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-408A13.4
hsa-miR-125b-5p
0.648
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000610061
Biotype: lincRNA
Gene id: ENSG00000272871
Gene Name: RP11-408A13.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:14589355-14589383
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-140A9.1
hsa-miR-125b-5p
0.466
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000412228
Biotype: antisense
Gene id: ENSG00000231050
Gene Name: RP1-140A9.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
1:1891596-1891624
exon
HITS-CLIP
DIRECT
LncBasev2
1:1892406-1892434
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-418I22.2
hsa-miR-125b-5p
0.683
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000570038
Biotype: lincRNA
Gene id: ENSG00000260071
Gene Name: RP11-418I22.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
16:9501737-9501765
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-43D4.2
hsa-miR-125b-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000548397
Biotype: processed_pseudogene
Gene id: ENSG00000258111
Gene Name: RP11-43D4.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
12:104514250-104514278
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-445F12.1
hsa-miR-125b-5p
0.440
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000621428
Biotype: antisense
Gene id: ENSG00000277268
Gene Name: RP11-445F12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary

miRNA Details
Name: hsa-miR-125b-5p
Sequence: ucccugagacccuaacuuguga
MirBase ID: MIMAT0000423
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
17:36933063-36933091
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept