LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-592N21.2
hsa-miR-125a-3p
0.507
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000562681
Biotype: sense_intronic
Gene id: ENSG00000260586
Gene Name: RP11-592N21.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:71348440-71348468
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-661A12.4
hsa-miR-125a-3p
0.413
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000517300
Biotype: antisense
Gene id: ENSG00000254144
Gene Name: RP11-661A12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
8:143542113-143542141
exon
HITS-CLIP
DIRECT
LncBasev2
8:143542113-143542141
exon
HITS-CLIP
DIRECT
LncBasev2
8:143542113-143542141
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-66B24.4
hsa-miR-125a-3p
0.443
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000560068
Biotype: antisense
Gene id: ENSG00000259583
Gene Name: RP11-66B24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:100913658-100913686
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-677M14.6
hsa-miR-125a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000534607
Biotype: processed_pseudogene
Gene id: ENSG00000254509
Gene Name: RP11-677M14.6
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
11:124791431-124791459
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-74E22.6
hsa-miR-125a-3p
0.384
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000608984
Biotype: lincRNA
Gene id: ENSG00000272911
Gene Name: RP11-74E22.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
17:2688888-2688916
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-81A1.6
hsa-miR-125a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000618835
Biotype: sense_intronic
Gene id: ENSG00000278600
Gene Name: RP11-81A1.6
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
15:79921649-79921677
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-958N24.1
hsa-miR-125a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000534164
Biotype: transcribed_unprocessed_pseudogene
Gene id: ENSG00000183458
Gene Name: RP11-958N24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
16:14918674-14918702
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-98I9.4
hsa-miR-125a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000418945
Biotype: antisense
Gene id: ENSG00000228506
Gene Name: RP11-98I9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:99431326-99431354
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-9L18.2
hsa-miR-125a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000400979
Biotype: processed_pseudogene
Gene id: ENSG00000215835
Gene Name: RP11-9L18.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:166276543-166276571
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-28C20.1
hsa-miR-125a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000404707
Biotype: processed_pseudogene
Gene id: ENSG00000217612
Gene Name: RP1-28C20.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
6:145490126-145490154
exon
HITS-CLIP
DIRECT
LncBasev2
6:145490126-145490154
exon
HITS-CLIP
DIRECT
LncBasev2
RP3-400B16.1
hsa-miR-125a-3p
0.698
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000427049
Biotype: lincRNA
Gene id: ENSG00000234817
Gene Name: RP3-400B16.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:4156396-4156424
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-671O14.6
hsa-miR-125a-3p
0.725
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000624919
Biotype: sense_overlapping
Gene id: ENSG00000280434
Gene Name: RP4-671O14.6
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
22:44150673-44150701
exon
HITS-CLIP
DIRECT
LncBasev2
22:44150673-44150701
exon
HITS-CLIP
DIRECT
LncBasev2
22:44150673-44150701
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:44150673-44150701
exon
HITS-CLIP
DIRECT
LncBasev2
RP5-881P19.7
hsa-miR-125a-3p
0.691
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000623471
Biotype: lincRNA
Gene id: ENSG00000276255
Gene Name: RP5-881P19.7
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
1:228074300-228074328
exon
HITS-CLIP
DIRECT
LncBasev2
RP6-24A23.7
hsa-miR-125a-3p
0.524
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000564206
Biotype: sense_overlapping
Gene id: ENSG00000261409
Gene Name: RP6-24A23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:hippuristanol
Location
Region
Method
Result
Validation Type
Source
X:108721107-108721135
exon
HITS-CLIP
DIRECT
LncBasev2
X:108721081-108721109
exon
HITS-CLIP
DIRECT
LncBasev2
X:108721081-108721109
exon
HITS-CLIP
DIRECT
LncBasev2
RPL21P126
hsa-miR-125a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000470049
Biotype: processed_pseudogene
Gene id: ENSG00000242320
Gene Name: RPL21P126
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
18:55635840-55635868
exon
HITS-CLIP
DIRECT
LncBasev2
RPL3P7
hsa-miR-125a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000417878
Biotype: processed_pseudogene
Gene id: ENSG00000225093
Gene Name: RPL3P7
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:108004641-108004669
exon
HITS-CLIP
DIRECT
LncBasev2
RPL7P60
hsa-miR-125a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000397636
Biotype: processed_pseudogene
Gene id: ENSG00000214142
Gene Name: RPL7P60
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:100140589-100140617
exon
HITS-CLIP
DIRECT
LncBasev2
RPLP1P11
hsa-miR-125a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000453002
Biotype: processed_pseudogene
Gene id: ENSG00000243686
Gene Name: RPLP1P11
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
17:16044619-16044647
exon
HITS-CLIP
DIRECT
LncBasev2
RPS19P3
hsa-miR-125a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000480487
Biotype: processed_pseudogene
Gene id: ENSG00000240463
Gene Name: RPS19P3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:34568934-34568962
exon
HITS-CLIP
DIRECT
LncBasev2
RPS4XP13
hsa-miR-125a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000483219
Biotype: processed_pseudogene
Gene id: ENSG00000240371
Gene Name: RPS4XP13
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:57576547-57576575
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HMSC
IP
Tested Cell Line: HMSC
Category: Stem/Progenitor
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:57576547-57576575
exon
HITS-CLIP
DIRECT
LncBasev2
11:57576547-57576575
exon
HITS-CLIP
DIRECT
LncBasev2
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