LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
PWRN4
hsa-miR-125a-3p
0.501
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000563016
Biotype: lincRNA
Gene id: ENSG00000260232
Gene Name: PWRN4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:23975201-23975229
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-1055B8.4
hsa-miR-125a-3p
0.470
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000571724
Biotype: lincRNA
Gene id: ENSG00000262877
Gene Name: RP11-1055B8.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
17:81388215-81388243
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-115H13.1
hsa-miR-125a-3p
0.450
mTTBlnPmP
IP

Gene Details
Chromosome: Y
Transcript: ENST00000620503
Biotype: sense_intronic
Gene id: ENSG00000273906
Gene Name: RP11-115H13.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
Y:6919385-6919413
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-118H4.1
hsa-miR-125a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000411586
Biotype: processed_pseudogene
Gene id: ENSG00000229965
Gene Name: RP11-118H4.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:226438642-226438670
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-118K6.3
hsa-miR-125a-3p
0.547
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000607898
Biotype: lincRNA
Gene id: ENSG00000273001
Gene Name: RP11-118K6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:3065928-3065956
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-138I17.1
hsa-miR-125a-3p
0.413
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000505736
Biotype: lincRNA
Gene id: ENSG00000248869
Gene Name: RP11-138I17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
4:136798213-136798241
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-13N13.2
hsa-miR-125a-3p
0.405
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000577906
Biotype: lincRNA
Gene id: ENSG00000263350
Gene Name: RP11-13N13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
18:21630150-21630178
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-159D12.2
hsa-miR-125a-3p
0.569
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000585065
Biotype: lincRNA
Gene id: ENSG00000264112
Gene Name: RP11-159D12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
17:57991122-57991150
exon
HITS-CLIP
DIRECT
LncBasev2
17:57991122-57991150
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-175O19.4
hsa-miR-125a-3p
0.985
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000421806
Biotype: antisense
Gene id: ENSG00000231025
Gene Name: RP11-175O19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:96995534-96995562
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-267C16.1
hsa-miR-125a-3p
0.432
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000435144
Biotype: lincRNA
Gene id: ENSG00000227115
Gene Name: RP11-267C16.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
18:51562333-51562361
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-314C16.1
hsa-miR-125a-3p
0.474
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: NR_038979.1
Biotype: lincRNA
Gene id: NR_038979.1 (gene)
Gene Name: RP11-314C16.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:8435977-8436005
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-347H15.2
hsa-miR-125a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000525487
Biotype: processed_pseudogene
Gene id: ENSG00000255500
Gene Name: RP11-347H15.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:50268532-50268560
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:50268532-50268560
exon
HITS-CLIP
DIRECT
LncBasev2
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
11:50268532-50268560
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-379H18.1
hsa-miR-125a-3p
0.736
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000605778
Biotype: antisense
Gene id: ENSG00000271122
Gene Name: RP11-379H18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:35697405-35697433
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-389O22.4
hsa-miR-125a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000457967
Biotype: processed_pseudogene
Gene id: ENSG00000233839
Gene Name: RP11-389O22.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
1:113169143-113169171
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-425L10.1
hsa-miR-125a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000467930
Biotype: processed_pseudogene
Gene id: ENSG00000244313
Gene Name: RP11-425L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:46428747-46428775
exon
HITS-CLIP
DIRECT
LncBasev2
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
11:46428747-46428775
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-449P15.2
hsa-miR-125a-3p
0.505
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000609998
Biotype: antisense
Gene id: ENSG00000273151
Gene Name: RP11-449P15.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:884921-884949
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-145M24.1
hsa-miR-125a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000531489
Biotype: processed_pseudogene
Gene id: ENSG00000254708
Gene Name: RP1-145M24.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:34335617-34335645
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-498C9.15
hsa-miR-125a-3p
0.518
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000582866
Biotype: lincRNA
Gene id: ENSG00000263731
Gene Name: RP11-498C9.15
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
17:81879164-81879192
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-531A24.3
hsa-miR-125a-3p
0.675
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000564832
Biotype: lincRNA
Gene id: ENSG00000260838
Gene Name: RP11-531A24.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:72948353-72948381
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-54C4.1
hsa-miR-125a-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000518134
Biotype: processed_transcript
Gene id: ENSG00000213433
Gene Name: RP11-54C4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
5:151765891-151765919
exon
HITS-CLIP
DIRECT
LncBasev2
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