LncBase Experimental v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-216L13.19
hsa-miR-124-3p
0.419
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000415992
Biotype: retained_intron
Gene id: ENSG00000273066
Gene Name: RP11-216L13.19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
9:136809157-136809185
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-227G15.3
hsa-miR-124-3p
0.899
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000578389
Biotype: processed_transcript
Gene id: ENSG00000265794
Gene Name: RP11-227G15.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:32351743-32351771
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-244O19.1
hsa-miR-124-3p
0.581
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000567068
Biotype: sense_overlapping
Gene id: ENSG00000261534
Gene Name: RP11-244O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:121817204-121817232
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-258O13.1
hsa-miR-124-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000526851
Biotype: lincRNA
Gene id: ENSG00000255209
Gene Name: RP11-258O13.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
11:79612276-79612304
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-282K24.3
hsa-miR-124-3p
0.709
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000501211
Biotype: sense_intronic
Gene id: ENSG00000253284
Gene Name: RP11-282K24.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:19154124-19154152
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-347H15.2
hsa-miR-124-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000525487
Biotype: processed_pseudogene
Gene id: ENSG00000255500
Gene Name: RP11-347H15.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:50268559-50268587
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-352E8.2
hsa-miR-124-3p
0.671
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000608631
Biotype: lincRNA
Gene id: ENSG00000272859
Gene Name: RP11-352E8.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:73052679-73052707
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-362F19.1
hsa-miR-124-3p
0.430
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000511213
Biotype: lincRNA
Gene id: ENSG00000248810
Gene Name: RP11-362F19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:141332428-141332456
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-365O16.1
hsa-miR-124-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000415453
Biotype: processed_pseudogene
Gene id: ENSG00000236773
Gene Name: RP11-365O16.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:224175596-224175624
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-373D23.3
hsa-miR-124-3p
0.557
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000605056
Biotype: lincRNA
Gene id: ENSG00000270210
Gene Name: RP11-373D23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:28426532-28426560
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-381O6.1
hsa-miR-124-3p
0.593
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000615941
Biotype: sense_intronic
Gene id: ENSG00000276740
Gene Name: RP11-381O6.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:107466569-107466597
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-383J24.6
hsa-miR-124-3p
0.890
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000607837
Biotype: lincRNA
Gene id: ENSG00000271975
Gene Name: RP11-383J24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:124307845-124307873
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-396C23.2
hsa-miR-124-3p
0.532
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000602806
Biotype: lincRNA
Gene id: ENSG00000225518
Gene Name: RP11-396C23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:226086943-226086971
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-3L10.2
hsa-miR-124-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000413598
Biotype: processed_pseudogene
Gene id: ENSG00000227371
Gene Name: RP11-3L10.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
7:121419066-121419094
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-400F19.18
hsa-miR-124-3p
0.890
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000591237
Biotype: sense_intronic
Gene id: ENSG00000267632
Gene Name: RP11-400F19.18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:42510912-42510940
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-419C5.2
hsa-miR-124-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000525562
Biotype: processed_transcript
Gene id: ENSG00000226232
Gene Name: RP11-419C5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:69982335-69982363
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-452L6.5
hsa-miR-124-3p
0.635
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000564629
Biotype: antisense
Gene id: ENSG00000260267
Gene Name: RP11-452L6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:31458207-31458235
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-455P21.3
hsa-miR-124-3p
0.517
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000495684
Biotype: lincRNA
Gene id: ENSG00000278610
Gene Name: RP11-455P21.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:222990672-222990700
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-473N11.2
hsa-miR-124-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000537175
Biotype: processed_pseudogene
Gene id: ENSG00000256238
Gene Name: RP11-473N11.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:16402266-16402294
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-474P12.3
hsa-miR-124-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000411625
Biotype: processed_pseudogene
Gene id: ENSG00000177736
Gene Name: RP11-474P12.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
9:124968531-124968559
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by:
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