LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
LINC01301
hsa-miR-124-3p
0.583
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000506428
Biotype: lincRNA
Gene id: ENSG00000251396
Gene Name: LINC01301
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:60404093-60404121
exon
HITS-CLIP
DIRECT
LncBasev2
LOC100506548
hsa-miR-124-3p
0.528
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: NR_037665.1
Biotype: sense
Gene id: NR_037665.1 (gene)
Gene Name: LOC100506548
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:40826171-40826199
exon
HITS-CLIP
DIRECT
LncBasev2
5:40827377-40827405
exon
HITS-CLIP
DIRECT
LncBasev2
LOC100507424
hsa-miR-124-3p
0.423
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: NR_038933.1
Biotype: sense
Gene id: NR_038933.1 (gene)
Gene Name: LOC100507424
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:2836866-2836894
exon
HITS-CLIP
DIRECT
LncBasev2
LOC284581
hsa-miR-124-3p
0.997
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: NR_046097.1
Biotype: lincRNA
Gene id: NR_046097.1 (gene)
Gene Name: LOC284581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:205895843-205895871
exon
HITS-CLIP
DIRECT
LncBasev2
1:205862229-205862257
exon
HITS-CLIP
DIRECT
LncBasev2
LOC91450
hsa-miR-124-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: NR_026998.1
Biotype: sense
Gene id: NR_026998.1 (gene)
Gene Name: LOC91450
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
15:77993472-77993500
exon
HITS-CLIP
DIRECT
LncBasev2
LRRC37BP1
hsa-miR-124-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000417404
Biotype: processed_transcript
Gene id: ENSG00000250462
Gene Name: LRRC37BP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:30635061-30635089
exon
HITS-CLIP
DIRECT
LncBasev2
LRRC75A-AS1
hsa-miR-124-3p
0.444
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000497774
Biotype: retained_intron
Gene id: ENSG00000175061
Gene Name: LRRC75A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:16441445-16441473
exon
HITS-CLIP
DIRECT
LncBasev2
MAGI2-AS3
hsa-miR-124-3p
0.426
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000452320
Biotype: retained_intron
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:79460488-79460516
exon
HITS-CLIP
DIRECT
LncBasev2
MALAT1
hsa-miR-124-3p
0.673
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
11:65503428-65503456
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505549-65505577
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505549-65505577
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503428-65503456
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500215-65500243
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500215-65500243
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505549-65505577
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503428-65503456
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500215-65500243
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500215-65500243
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505549-65505577
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503428-65503456
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505549-65505577
exon
HITS-CLIP
DIRECT
LncBasev2
11:65503428-65503456
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500215-65500243
exon
HITS-CLIP
DIRECT
LncBasev2
MAPKAPK5-AS1
hsa-miR-124-3p
0.704
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000428207
Biotype: lincRNA
Gene id: ENSG00000234608
Gene Name: MAPKAPK5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:111839830-111839858
exon
HITS-CLIP
DIRECT
LncBasev2
MAPKAPK5-AS1
hsa-miR-124-3p
0.703
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: NR_015404.1
Biotype: antisense
Gene id: NR_015404.1 (gene)
Gene Name: MAPKAPK5-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:111839830-111839858
exon
HITS-CLIP
DIRECT
LncBasev2
MEG3
hsa-miR-124-3p
0.582
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000455531
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:100833323-100833351
exon
HITS-CLIP
DIRECT
LncBasev2
MIR124-2HG
hsa-miR-124-3p
0.795
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000520799
Biotype: lincRNA
Gene id: ENSG00000254377
Gene Name: MIR124-2HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:64378741-64378769
exon
HITS-CLIP
DIRECT
LncBasev2
MMP24-AS1
hsa-miR-124-3p
0.472
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000424358
Biotype: antisense
Gene id: ENSG00000126005
Gene Name: MMP24-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
20:35277347-35277375
exon
HITS-CLIP
DIRECT
LncBasev2
MROH7-TTC4
hsa-miR-124-3p
0.699
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: NR_037639.1
Biotype: sense
Gene id: NR_037639.1 (gene)
Gene Name: MROH7-TTC4
UCSC graphic: -
Expression: -

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:54702718-54702746
exon
HITS-CLIP
DIRECT
LncBasev2
MSL3P1
hsa-miR-124-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000438684
Biotype: processed_transcript
Gene id: ENSG00000224287
Gene Name: MSL3P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:233866963-233866991
exon
HITS-CLIP
DIRECT
LncBasev2
MZF1-AS1
hsa-miR-124-3p
0.374
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: ENST00000600534
Biotype: antisense
Gene id: ENSG00000267858
Gene Name: MZF1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
19:58559236-58559264
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-124-3p
0.950
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:hippuristanol
Location
Region
Method
Result
Validation Type
Source
11:65428021-65428049
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424419-65424447
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424481-65424509
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427454-65427482
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426040-65426068
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424419-65424447
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424419-65424447
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427454-65427482
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426040-65426068
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426552-65426580
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424481-65424509
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426040-65426068
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427454-65427482
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424419-65424447
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424481-65424509
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444980-65445008
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424481-65424509
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434341-65434369
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426552-65426580
exon
HITS-CLIP
DIRECT
LncBasev2
11:65428021-65428049
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426988-65427016
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424419-65424447
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427454-65427482
exon
HITS-CLIP
DIRECT
LncBasev2
11:65428767-65428795
exon
HITS-CLIP
DIRECT
LncBasev2
11:65429312-65429340
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426040-65426068
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426552-65426580
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424560-65424588
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424481-65424509
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426040-65426068
exon
HITS-CLIP
DIRECT
LncBasev2
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRN.
Location
Region
Method
Result
Validation Type
Source
11:65424560-65424588
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65444980-65445008
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427454-65427482
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424560-65424588
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425717-65425745
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426040-65426068
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65436673-65436701
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426552-65426580
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426040-65426068
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444980-65445008
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-124-3p
0.804
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: NR_028272.1
Biotype: lincRNA
Gene id: NR_028272.1 (gene)
Gene Name: NEAT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
11:65426040-65426068
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424481-65424509
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424481-65424509
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424419-65424447
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426040-65426068
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424481-65424509
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426040-65426068
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424419-65424447
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424419-65424447
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424481-65424509
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426040-65426068
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424419-65424447
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424419-65424447
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424481-65424509
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424560-65424588
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426040-65426068
exon
HITS-CLIP
DIRECT
LncBasev2
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRN.
Location
Region
Method
Result
Validation Type
Source
11:65424560-65424588
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65424560-65424588
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425717-65425745
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426040-65426068
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65426040-65426068
exon
HITS-CLIP
DIRECT
LncBasev2
NR2F1-AS1
hsa-miR-124-3p
0.368
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000504474
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:93542614-93542642
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by:
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