LncBase Experimental v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RFPL1S
hsa-miR-1-3p
0.585
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000461286
Biotype: antisense
Gene id: ENSG00000225465
Gene Name: RFPL1S
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:29437246-29437274
exon
HITS-CLIP
DIRECT
LncBasev2
RFPL1S
hsa-miR-1-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: NR_002727.2
Biotype: antisense
Gene id: NR_002727.2 (gene)
Gene Name: RFPL1S
UCSC graphic: -
Expression: -

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:29437246-29437274
exon
HITS-CLIP
DIRECT
LncBasev2
RHEBP3
hsa-miR-1-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000411920
Biotype: processed_pseudogene
Gene id: ENSG00000237446
Gene Name: RHEBP3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
22:18019201-18019229
exon
HITS-CLIP
DIRECT
LncBasev2
RMRP
hsa-miR-1-3p
0.415
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000602361
Biotype: lincRNA
Gene id: ENSG00000269900
Gene Name: RMRP
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
9:35657893-35657921
exon
HITS-CLIP
DIRECT
LncBasev2
9:35657893-35657921
exon
HITS-CLIP
DIRECT
LncBasev2
9:35657893-35657921
exon
HITS-CLIP
DIRECT
LncBasev2
9:35657893-35657921
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:35657893-35657921
exon
HITS-CLIP
DIRECT
LncBasev2
RNF216P1
hsa-miR-1-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000471244
Biotype: processed_transcript
Gene id: ENSG00000196204
Gene Name: RNF216P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
7:4997009-4997037
exon
HITS-CLIP
DIRECT
LncBasev2
RNF219-AS1
hsa-miR-1-3p
0.473
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000607862
Biotype: antisense
Gene id: ENSG00000234377
Gene Name: RNF219-AS1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:78583143-78583171
exon
HITS-CLIP
DIRECT
LncBasev2
RNF7P1
hsa-miR-1-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000478598
Biotype: processed_pseudogene
Gene id: ENSG00000239831
Gene Name: RNF7P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:57519761-57519789
exon
HITS-CLIP
DIRECT
LncBasev2
RNU6ATAC35P
hsa-miR-1-3p
0.413
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000609276
Biotype: lincRNA
Gene id: ENSG00000221571
Gene Name: RNU6ATAC35P
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
1:220825780-220825808
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-100E13.1
hsa-miR-1-3p
0.552
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000437416
Biotype: antisense
Gene id: ENSG00000233384
Gene Name: RP11-100E13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:224615347-224615375
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-1096G20.5
hsa-miR-1-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000580270
Biotype: antisense
Gene id: ENSG00000266368
Gene Name: RP11-1096G20.5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:11953930-11953958
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-120M18.2
hsa-miR-1-3p
0.418
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000590353
Biotype: processed_transcript
Gene id: ENSG00000267009
Gene Name: RP11-120M18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:68515520-68515548
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-151A6.4
hsa-miR-1-3p
0.391
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000454752
Biotype: sense_intronic
Gene id: ENSG00000224356
Gene Name: RP11-151A6.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:100536262-100536290
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-166D19.1
hsa-miR-1-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000531381
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:122090398-122090426
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-174G17.2
hsa-miR-1-3p
0.372
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000569711
Biotype: lincRNA
Gene id: ENSG00000261781
Gene Name: RP11-174G17.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:18073824-18073852
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-202H2.1
hsa-miR-1-3p
0.986
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000550014
Biotype: lincRNA
Gene id: ENSG00000258185
Gene Name: RP11-202H2.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:86838815-86838843
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-215H22.1
hsa-miR-1-3p
0.399
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000561816
Biotype: lincRNA
Gene id: ENSG00000261340
Gene Name: RP11-215H22.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:29980392-29980420
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-263K19.4
hsa-miR-1-3p
0.508
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000453136
Biotype: antisense
Gene id: ENSG00000231064
Gene Name: RP11-263K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:155200266-155200294
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-288E14.2
hsa-miR-1-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000533701
Biotype: processed_pseudogene
Gene id: ENSG00000234106
Gene Name: RP11-288E14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:93535562-93535590
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-297M9.2
hsa-miR-1-3p
0.450
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000562861
Biotype: lincRNA
Gene id: ENSG00000260432
Gene Name: RP11-297M9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:9753865-9753893
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-29P20.1
hsa-miR-1-3p
0.602
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000607405
Biotype: lincRNA
Gene id: ENSG00000272515
Gene Name: RP11-29P20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:87607961-87607989
exon
HITS-CLIP
DIRECT
LncBasev2
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