LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
MEG3
hsa-miR-1-3p
0.579
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000398460
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:100858425-100858453
exon
HITS-CLIP
DIRECT
LncBasev2
MIR29B1
hsa-miR-1-3p
0.613
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000432045
Biotype: lincRNA
Gene id: ENSG00000226380
Gene Name: MIR29B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:130876901-130876929
exon
HITS-CLIP
DIRECT
LncBasev2
7:130878431-130878459
exon
HITS-CLIP
DIRECT
LncBasev2
7:130880890-130880918
exon
HITS-CLIP
DIRECT
LncBasev2
MORF4L1P1
hsa-miR-1-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000404582
Biotype: processed_pseudogene
Gene id: ENSG00000218283
Gene Name: MORF4L1P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:220253576-220253604
exon
HITS-CLIP
DIRECT
LncBasev2
1:220253680-220253708
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-1-3p
0.971
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:hippuristanol
Location
Region
Method
Result
Validation Type
Source
11:65429198-65429226
exon
HITS-CLIP
DIRECT
LncBasev2
11:65429198-65429226
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443062-65443090
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443546-65443574
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443546-65443574
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424651-65424679
exon
HITS-CLIP
DIRECT
LncBasev2
11:65437562-65437590
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424651-65424679
exon
HITS-CLIP
DIRECT
LncBasev2
11:65429198-65429226
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424651-65424679
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444172-65444200
exon
HITS-CLIP
DIRECT
LncBasev2
11:65428397-65428425
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424651-65424679
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65436720-65436748
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443546-65443574
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444172-65444200
exon
HITS-CLIP
DIRECT
LncBasev2
11:65429198-65429226
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426530-65426558
exon
HITS-CLIP
DIRECT
LncBasev2
11:65428397-65428425
exon
HITS-CLIP
DIRECT
LncBasev2
11:65431020-65431053
exon
HITS-CLIP
DIRECT
LncBasev2
11:65437562-65437590
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442389-65442417
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65433040-65433068
exon
HITS-CLIP
DIRECT
LncBasev2
11:65435311-65435339
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443062-65443090
exon
HITS-CLIP
DIRECT
LncBasev2
11:65438969-65438997
exon
HITS-CLIP
DIRECT
LncBasev2
11:65429198-65429226
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426906-65426934
exon
HITS-CLIP
DIRECT
LncBasev2
11:65431020-65431048
exon
HITS-CLIP
DIRECT
LncBasev2
11:65431599-65431627
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426530-65426558
exon
HITS-CLIP
DIRECT
LncBasev2
11:65437107-65437135
exon
HITS-CLIP
DIRECT
LncBasev2
11:65438727-65438755
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HMSC
IP
Tested Cell Line: HMSC
Category: Stem/Progenitor
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65431020-65431053
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-1-3p
0.363
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: NR_028272.1
Biotype: lincRNA
Gene id: NR_028272.1 (gene)
Gene Name: NEAT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65426530-65426558
exon
HITS-CLIP
DIRECT
LncBasev2
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
11:65424651-65424679
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424651-65424679
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424651-65424679
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424651-65424679
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65426530-65426558
exon
HITS-CLIP
DIRECT
LncBasev2
NUTM2B-AS1
hsa-miR-1-3p
0.362
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000610681
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:79765459-79765487
exon
HITS-CLIP
DIRECT
LncBasev2
OIP5-AS1
hsa-miR-1-3p
0.750
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000500949
Biotype: antisense
Gene id: ENSG00000247556
Gene Name: OIP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
15:41300850-41300878
exon
HITS-CLIP
DIRECT
LncBasev2
15:41306072-41306100
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:41298345-41298373
exon
HITS-CLIP
DIRECT
LncBasev2
15:41298460-41298488
exon
HITS-CLIP
DIRECT
LncBasev2
15:41306072-41306100
exon
HITS-CLIP
DIRECT
LncBasev2
15:41304324-41304352
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:41305926-41305954
exon
HITS-CLIP
DIRECT
LncBasev2
OIP5-AS1
hsa-miR-1-3p
0.566
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: NR_026757.1
Biotype: lincRNA
Gene id: NR_026757.1 (gene)
Gene Name: OIP5-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:41298345-41298373
exon
HITS-CLIP
DIRECT
LncBasev2
15:41298460-41298488
exon
HITS-CLIP
DIRECT
LncBasev2
OSMR-AS1
hsa-miR-1-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000512519
Biotype: lincRNA
Gene id: ENSG00000249740
Gene Name: OSMR-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:38843719-38843747
exon
HITS-CLIP
DIRECT
LncBasev2
OTUD6B-AS1
hsa-miR-1-3p
0.843
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000524003
Biotype: antisense
Gene id: ENSG00000253738
Gene Name: OTUD6B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:91068392-91068420
exon
HITS-CLIP
DIRECT
LncBasev2
PABPC1P1
hsa-miR-1-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000506347
Biotype: processed_pseudogene
Gene id: ENSG00000231707
Gene Name: PABPC1P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:39973793-39973821
exon
HITS-CLIP
DIRECT
LncBasev2
PART1
hsa-miR-1-3p
0.640
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000504876
Biotype: lincRNA
Gene id: ENSG00000152931
Gene Name: PART1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:60523161-60523189
exon
HITS-CLIP
DIRECT
LncBasev2
5:60525755-60525783
exon
HITS-CLIP
DIRECT
LncBasev2
5:60523440-60523468
exon
HITS-CLIP
DIRECT
LncBasev2
PIPSL
hsa-miR-1-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000480546
Biotype: processed_transcript
Gene id: ENSG00000180764
Gene Name: PIPSL
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:93960338-93960366
exon
HITS-CLIP
DIRECT
LncBasev2
PIR-FIGF
hsa-miR-1-3p
0.622
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: NR_037859.2
Biotype: sense
Gene id: NR_037859.2 (gene)
Gene Name: PIR-FIGF
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:15425921-15425949
exon
HITS-CLIP
DIRECT
LncBasev2
PKI55
hsa-miR-1-3p
0.467
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000562038
Biotype: lincRNA
Gene id: ENSG00000260804
Gene Name: PKI55
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:216219015-216219043
exon
HITS-CLIP
DIRECT
LncBasev2
POT1-AS1
hsa-miR-1-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000453342
Biotype: antisense
Gene id: ENSG00000224897
Gene Name: POT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:125144201-125144229
exon
HITS-CLIP
DIRECT
LncBasev2
PRKAR1AP
hsa-miR-1-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000441422
Biotype: processed_pseudogene
Gene id: ENSG00000233401
Gene Name: PRKAR1AP
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:92126285-92126313
exon
HITS-CLIP
DIRECT
LncBasev2
PWAR6
hsa-miR-1-3p
0.433
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000552334
Biotype: lincRNA
Gene id: ENSG00000257151
Gene Name: PWAR6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:25035538-25035566
exon
HITS-CLIP
DIRECT
LncBasev2
RBBP4P1
hsa-miR-1-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000502424
Biotype: processed_pseudogene
Gene id: ENSG00000249485
Gene Name: RBBP4P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:14797436-14797464
exon
HITS-CLIP
DIRECT
LncBasev2
RBMS1P1
hsa-miR-1-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000417216
Biotype: processed_pseudogene
Gene id: ENSG00000225422
Gene Name: RBMS1P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:66234856-66234884
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by:
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