LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-99b-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-30K9.6
hsa-miR-99b-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000500929
Biotype: lincRNA
Gene id: ENSG00000245975
Gene Name: RP11-30K9.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
692-709
0.025
Not Conserved
6mer
983-1007
0.006
1
6mer
87-105
0.005
1
AC034228.4
hsa-miR-99b-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000446275
Biotype: antisense
Gene id: ENSG00000234758
Gene Name: AC034228.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
317-335
0.035
2
XLOC_003210
hsa-miR-99b-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006603
Biotype: transcript isomorph
Gene id: XLOC_003210
Gene Name: XLOC_003210
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
305-320
0.021
4
7mer
352-378
0.015
2
RP11-388P9.2
hsa-miR-99b-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000619719
Biotype: antisense
Gene id: ENSG00000232682
Gene Name: RP11-388P9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-114
0.029
4
6mer
331-346
0.006
4
RP3-323A16.1
hsa-miR-99b-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44654-44678
0.005
1
7mer
45009-45029
0.004
1
7mer
20129-20154
0.004
1
7mer
52052-52079
0.003
1
6mer
51092-51115
0.003
1
6mer
46024-46048
0.002
2
7mer
35707-35734
0.002
1
6mer
4533-4552
0.001
0
6mer
48853-48880
0.001
1
6mer
39568-39588
0.001
1
6mer
42611-42626
0.001
1
6mer
20624-20648
0.001
2
6mer
16713-16724
0.001
1
6mer
11675-11686
0.001
2
6mer
26699-26710
0.001
1
6mer
41499-41526
0.001
0
7mer
18394-18419
0.001
0
6mer
18434-18455
0.000
Not Conserved
XLOC_009947
hsa-miR-99b-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020200
Biotype: transcript isomorph
Gene id: XLOC_009947
Gene Name: XLOC_009947
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
52-74
0.029
5
7mer
332-357
0.006
1
TSIX
hsa-miR-99b-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11517-11540
0.012
Not Conserved
6mer
324-338
0.005
1
7mer
1133-1156
0.003
0
6mer
4436-4450
0.002
1
6mer
14357-14377
0.002
Not Conserved
6mer
10953-10974
0.002
Not Conserved
7mer
11172-11185
0.001
Not Conserved
6mer
19158-19178
0.001
1
6mer
20917-20940
0.001
1
6mer
7311-7335
0.001
0
7mer
14819-14840
0.001
Not Conserved
6mer
11654-11679
0.001
Not Conserved
6mer
9462-9480
0.001
1
6mer
14012-14029
0.001
Not Conserved
6mer
17023-17041
0.001
0
MIR646HG
hsa-miR-99b-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000431181
Biotype: lincRNA
Gene id: ENSG00000228340
Gene Name: MIR646HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
357-374
0.025
6
7mer
285-308
0.006
1
6mer
207-226
0.004
1
LINC00507
hsa-miR-99b-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544645
Biotype: lincRNA
Gene id: ENSG00000256193
Gene Name: LINC00507
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
100-122
0.028
5
7mer
320-345
0.006
1
LINC00507
hsa-miR-99b-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_046392.1
Biotype: lincRNA
Gene id: NR_046392.1 (gene)
Gene Name: LINC00507
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-84
0.029
5
7mer
342-367
0.006
1
AC074391.1
hsa-miR-99b-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607539
Biotype: lincRNA
Gene id: ENSG00000204929
Gene Name: AC074391.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
83-108
0.026
7
7mer
108-133
0.008
0
LINC00559
hsa-miR-99b-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_047489.1
Biotype: lincRNA
Gene id: NR_047489.1 (gene)
Gene Name: LINC00559
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2514-2533
0.022
0
6mer
960-976
0.003
1
6mer
1170-1195
0.003
1
6mer
1543-1569
0.002
1
6mer
1947-1965
0.002
1
6mer
1415-1437
0.001
0
6mer
2484-2509
0.001
0
FLJ26245
hsa-miR-99b-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566900
Biotype: lincRNA
Gene id: ENSG00000261122
Gene Name: FLJ26245
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1110-1126
0.017
0
6mer
1280-1298
0.016
0
LINC00559
hsa-miR-99b-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000569476
Biotype: lincRNA
Gene id: ENSG00000261446
Gene Name: LINC00559
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2514-2533
0.022
0
6mer
960-976
0.003
1
6mer
1170-1195
0.003
1
6mer
1543-1569
0.002
1
6mer
1947-1965
0.002
1
6mer
1415-1437
0.001
0
6mer
2484-2509
0.001
0
CTD-3222D19.12
hsa-miR-99b-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595909
Biotype: lincRNA
Gene id: ENSG00000269399
Gene Name: CTD-3222D19.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
163-189
0.022
1
7mer
1915-1933
0.006
1
7mer
1480-1498
0.005
0
XLOC_010798
hsa-miR-99b-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022469
Biotype: transcript isomorph
Gene id: XLOC_010798
Gene Name: XLOC_010798
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
15-39
0.033
11
DNAH17-AS1
hsa-miR-99b-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588565
Biotype: antisense
Gene id: ENSG00000267432
Gene Name: DNAH17-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-89
0.033
0
XLOC_007141
hsa-miR-99b-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015064
Biotype: transcript isomorph
Gene id: XLOC_007141
Gene Name: XLOC_007141
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
58-84
0.016
1
6mer
16-38
0.016
1
RP11-407B7.1
hsa-miR-99b-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432154
Biotype: lincRNA
Gene id: ENSG00000230102
Gene Name: RP11-407B7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-181
0.017
0
6mer
2212-2230
0.007
4
6mer
2049-2059
0.004
1
7mer
1658-1675
0.003
1
6mer
1474-1499
0.001
1
6mer
1635-1653
0.001
Not Conserved
XLOC_009652
hsa-miR-99b-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021053
Biotype: transcript isomorph
Gene id: XLOC_009652
Gene Name: XLOC_009652
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
100-125
0.018
1
6mer
423-449
0.014
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept