LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-99b-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
XLOC_009532
hsa-miR-99b-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019739
Biotype: transcript isomorph
Gene id: XLOC_009532
Gene Name: XLOC_009532
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-80
0.042
1
HOXC-AS1
hsa-miR-99b-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000505700
Biotype: antisense
Gene id: ENSG00000250451
Gene Name: HOXC-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
244-263
0.025
4
6mer
38-63
0.016
7
RP11-1085N6.3
hsa-miR-99b-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556696
Biotype: antisense
Gene id: ENSG00000259133
Gene Name: RP11-1085N6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-42
0.023
2
7mer
293-319
0.018
2
RP11-401H2.1
hsa-miR-99b-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521294
Biotype: antisense
Gene id: ENSG00000253664
Gene Name: RP11-401H2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
448-468
0.026
1
6mer
272-292
0.013
5
RP11-111F5.8
hsa-miR-99b-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428709
Biotype: lincRNA
Gene id: ENSG00000233651
Gene Name: RP11-111F5.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3006-3020
0.037
0
6mer
942-956
0.002
Not Conserved
CTA-796E4.5
hsa-miR-99b-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24439-24464
0.004
1
7mer
28216-28238
0.004
0
6mer
30585-30604
0.004
1
7mer
12183-12205
0.004
1
7mer
21817-21841
0.003
0
8mer
8494-8511
0.003
1
7mer
9930-9944
0.003
0
6mer
25867-25892
0.002
1
6mer
7224-7248
0.002
4
6mer
925-949
0.002
Not Conserved
6mer
5026-5049
0.002
1
6mer
13701-13719
0.002
1
6mer
17042-17061
0.002
2
6mer
2625-2652
0.001
1
6mer
22261-22284
0.001
1
6mer
16281-16306
0.001
1
RP3-340N1.2
hsa-miR-99b-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431027
Biotype: lincRNA
Gene id: ENSG00000227066
Gene Name: RP3-340N1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
871-885
0.019
1
6mer
321-347
0.014
1
6mer
1708-1734
0.003
0
6mer
1418-1441
0.003
0
AC004637.1
hsa-miR-99b-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586675
Biotype: antisense
Gene id: ENSG00000267304
Gene Name: AC004637.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
336-361
0.038
0
DNAH17-AS1
hsa-miR-99b-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591373
Biotype: antisense
Gene id: ENSG00000267432
Gene Name: DNAH17-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-61
0.033
0
6mer
705-718
0.003
5
6mer
1302-1328
0.002
0
XLOC_008878
hsa-miR-99b-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017740
Biotype: transcript isomorph
Gene id: XLOC_008878
Gene Name: XLOC_008878
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-85
0.024
0
6mer
38-58
0.014
0
CTD-2541M15.1
hsa-miR-99b-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000515608
Biotype: antisense
Gene id: ENSG00000249898
Gene Name: CTD-2541M15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1900-1923
0.030
1
6mer
202-226
0.005
0
7mer
1386-1405
0.002
1
XLOC_001441
hsa-miR-99b-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002697
Biotype: transcript isomorph
Gene id: XLOC_001441
Gene Name: XLOC_001441
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-344
0.026
0
7mer
2335-2361
0.008
1
6mer
1119-1133
0.003
4
RP11-813F20.2
hsa-miR-99b-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591105
Biotype: lincRNA
Gene id: ENSG00000267674
Gene Name: RP11-813F20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
170-186
0.037
Not Conserved
TFAP2A-AS1
hsa-miR-99b-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000420777
Biotype: antisense
Gene id: ENSG00000229950
Gene Name: TFAP2A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
83-105
0.035
2
6mer
935-958
0.002
2
DLX6-AS1
hsa-miR-99b-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430027
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
15316-15338
0.008
6
6mer
29-45
0.008
4
6mer
14611-14627
0.003
5
6mer
12934-12955
0.003
5
6mer
7004-7026
0.002
2
6mer
14741-14759
0.002
1
6mer
14707-14729
0.002
1
6mer
14724-14747
0.002
0
6mer
1793-1814
0.002
2
6mer
12244-12266
0.002
0
6mer
3451-3468
0.001
0
6mer
9212-9231
0.001
1
LINC00507
hsa-miR-99b-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540882
Biotype: lincRNA
Gene id: ENSG00000256193
Gene Name: LINC00507
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-52
0.030
5
7mer
250-275
0.007
1
CTA-544A11.1
hsa-miR-99b-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624411
Biotype: antisense
Gene id: ENSG00000279802
Gene Name: CTA-544A11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
409-431
0.012
1
9mer
9009-9024
0.010
0
6mer
4-28
0.006
3
6mer
5366-5379
0.002
1
6mer
5895-5919
0.002
1
6mer
808-834
0.002
1
6mer
3719-3741
0.002
2
TFAP2A-AS1
hsa-miR-99b-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_033910.1
Biotype: antisense
Gene id: NR_033910.1 (gene)
Gene Name: TFAP2A-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-97
0.034
2
6mer
941-964
0.003
2
TFAP2A-AS1
hsa-miR-99b-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000443546
Biotype: antisense
Gene id: ENSG00000229950
Gene Name: TFAP2A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-150
0.036
2
XLOC_011488
hsa-miR-99b-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023279
Biotype: transcript isomorph
Gene id: XLOC_011488
Gene Name: XLOC_011488
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-99b-3p
Sequence: caagcucgugucuguggguccg
MirBase ID: MIMAT0004678
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
690-707
0.025
Not Conserved
6mer
981-1005
0.006
1
6mer
85-103
0.005
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept