LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-93-5p


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Gene
miRNA
Score
DIANA Links
HOTAIRM1
hsa-miR-93-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000428939
Biotype: antisense
Gene id: ENSG00000233429
Gene Name: HOTAIRM1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
735-747
0.043
8
6mer
736-760
0.008
7
RP11-177F15.1
hsa-miR-93-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442726
Biotype: lincRNA
Gene id: ENSG00000231877
Gene Name: RP11-177F15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2310-2332
0.039
2
9mer
353-371
0.009
0
6mer
713-740
0.004
1
RP11-707F2.1
hsa-miR-93-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505781
Biotype: lincRNA
Gene id: ENSG00000250905
Gene Name: RP11-707F2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
424-449
0.051
7
ZNF561-AS1
hsa-miR-93-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588765
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
108-132
0.051
1
XLOC_001117
hsa-miR-93-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001741
Biotype: transcript isomorph
Gene id: XLOC_001117
Gene Name: XLOC_001117
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-180
0.051
0
UXT-AS1
hsa-miR-93-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000591832
Biotype: antisense
Gene id: ENSG00000267064
Gene Name: UXT-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-49
0.051
7
UXT-AS1
hsa-miR-93-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000590504
Biotype: antisense
Gene id: ENSG00000267064
Gene Name: UXT-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-29
0.051
7
LOC100130452
hsa-miR-93-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_034036.1
Biotype: antisense
Gene id: NR_034036.1 (gene)
Gene Name: LOC100130452
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
329-351
0.047
1
6mer
394-420
0.004
0
LOC100129917
hsa-miR-93-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_036512.1
Biotype: lincRNA
Gene id: NR_036512.1 (gene)
Gene Name: LOC100129917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
302-326
0.050
1
RP11-440L14.1
hsa-miR-93-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503185
Biotype: antisense
Gene id: ENSG00000249592
Gene Name: RP11-440L14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
302-326
0.050
1
LINC00293
hsa-miR-93-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521715
Biotype: lincRNA
Gene id: ENSG00000253314
Gene Name: LINC00293
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1362-1387
0.033
1
7mer
547-565
0.017
0
RP5-1014D13.2
hsa-miR-93-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623726
Biotype: sense_overlapping
Gene id: ENSG00000279738
Gene Name: RP5-1014D13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6196-6213
0.015
1
7mer
5027-5045
0.004
0
9mer
10159-10179
0.003
0
9mer
7505-7524
0.003
0
9mer
11200-11220
0.003
0
7mer
6883-6907
0.003
Not Conserved
9mer
5893-5917
0.002
0
9mer
6586-6613
0.002
0
7mer
4521-4548
0.002
1
9mer
7171-7192
0.002
0
9mer
3091-3111
0.002
0
6mer
8185-8206
0.002
1
7mer
9512-9532
0.002
0
6mer
12245-12259
0.001
2
7mer
9777-9801
0.001
0
6mer
16091-16118
0.001
0
7mer
6264-6284
0.001
0
LOC100129917
hsa-miR-93-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_036511.1
Biotype: lincRNA
Gene id: NR_036511.1 (gene)
Gene Name: LOC100129917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
302-326
0.050
1
HOTAIRM1
hsa-miR-93-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000434063
Biotype: antisense
Gene id: ENSG00000233429
Gene Name: HOTAIRM1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
502-514
0.043
8
6mer
503-527
0.008
7
NAMA
hsa-miR-93-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_102271.1
Biotype: lincRNA
Gene id: NR_102271.1 (gene)
Gene Name: NAMA
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1204-1228
0.050
8
RP11-799D4.4
hsa-miR-93-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588697
Biotype: antisense
Gene id: ENSG00000266947
Gene Name: RP11-799D4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
261-285
0.050
1
RP3-412A9.17
hsa-miR-93-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1769-1789
0.010
1
9mer
394-418
0.006
0
9mer
16277-16297
0.006
Not Conserved
8mer
8688-8711
0.005
1
7mer
13460-13483
0.004
1
7mer
12837-12853
0.004
1
9mer
9784-9808
0.003
0
7mer
879-903
0.002
0
9mer
4752-4772
0.002
0
7mer
10050-10072
0.002
0
6mer
15025-15040
0.002
1
7mer
11949-11972
0.002
0
7mer
2540-2559
0.001
0
AC073133.1
hsa-miR-93-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000436670
Biotype: lincRNA
Gene id: ENSG00000233878
Gene Name: AC073133.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
145-161
0.050
6
RP11-361F15.2
hsa-miR-93-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000443556
Biotype: lincRNA
Gene id: ENSG00000225135
Gene Name: RP11-361F15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1081-1107
0.020
4
7mer
156-173
0.012
1
6mer
1234-1253
0.011
8
6mer
722-748
0.004
5
6mer
914-928
0.003
1
AP000487.4
hsa-miR-93-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000324630
Biotype: antisense
Gene id: ENSG00000254495
Gene Name: AP000487.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-93-5p
Sequence: caaagugcuguucgugcagguag
MirBase ID: MIMAT0000093
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-35
0.042
1
7mer
200-224
0.008
1
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